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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0104539 |
| Transcript ID | Lj0g3v0104539.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At3g57430, chloroplastic-like isoform X1 [Cicer arietinum] gi|502127210|ref|XP_004499603.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 19 | 19 | – | – | |
| Phobius | 1 | 3 | 3 | – | – | |
| SignalP | 1 | 20 | 20 | – | – | |
| Phobius | 1 | 24 | 24 | – | – | |
| PANTHER | 4 | 405 | 402 | 4.30E-255 | – | |
| Phobius | 4 | 15 | 12 | – | – | |
| PANTHER | 4 | 405 | 402 | 4.30E-255 | – | |
| Phobius | 16 | 24 | 9 | – | – | |
| Phobius | 25 | 437 | 413 | – | – | |
| ProSiteProfiles | 34 | 64 | 31 | 7.169 | ||
| Gene3D | 36 | 101 | 66 | 7.70E-05 | ||
| Pfam | 41 | 65 | 25 | 0.011 | ||
| ProSiteProfiles | 65 | 99 | 35 | 10.95 | ||
| TIGRFAM | 67 | 100 | 34 | 1.00E-06 | ||
| Pfam | 68 | 97 | 30 | 1.30E-04 | ||
| ProSiteProfiles | 167 | 201 | 35 | 10.95 | ||
| Gene3D | 168 | 209 | 42 | 7.70E-05 | ||
| TIGRFAM | 169 | 196 | 28 | 1.40E-06 | ||
| Pfam | 169 | 196 | 28 | 4.30E-07 | ||
| ProSiteProfiles | 204 | 239 | 36 | 6.193 | ||
| ProSiteProfiles | 240 | 270 | 31 | 7.245 | ||
| Pfam | 245 | 268 | 24 | 0.013 | ||
| ProSiteProfiles | 271 | 305 | 35 | 12.463 | ||
| Pfam | 271 | 317 | 47 | 4.00E-10 | ||
| TIGRFAM | 273 | 307 | 35 | 3.50E-09 | ||
| ProSiteProfiles | 306 | 341 | 36 | 7.826 | ||
| TIGRFAM | 308 | 342 | 35 | 0.0022 | ||
| Gene3D | 340 | 368 | 29 | 7.70E-05 | ||
| ProSiteProfiles | 342 | 376 | 35 | 9.558 | ||
| TIGRFAM | 346 | 374 | 29 | 5.90E-05 | ||
| Pfam | 346 | 373 | 28 | 5.00E-05 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj0g3v0104539.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0104539.1, powered by CORGI.
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