Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj0g3v0109489.1

Overview

Field Value
Gene ID Lj0g3v0109489
Transcript ID Lj0g3v0109489.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: syntaxin-related protein KNOLLE-like [Glycine max] gi|356559528|ref|XP_003548051.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
CYTOPLASMIC_DOMAIN
1 90 90 – –
PANTHER
PTHR19957
2 114 113 3.80E-73 –
Pfam
PF00804
2 54 53 1.70E-17
IPR006011
PANTHER
PTHR19957:SF91
2 114 113 3.80E-73 –
SMART
SM00397
14 81 68 2.00E-19
IPR000727
SUPERFAMILY
SSF58038
16 86 71 1.96E-19 –
Gene3D
G3DSA:1.20.5.110
17 112 96 3.00E-32 –
CDD
cd15848
18 80 63 1.69E-23 –
ProSiteProfiles
PS50192
19 81 63 18.032
IPR000727
ProSitePatterns
PS00914
25 65 41 –
IPR006012
Pfam
PF05739
57 107 51 5.70E-19
IPR000727
Phobius
TRANSMEMBRANE
91 111 21 – –
TMHMM
TMhelix
91 113 23 – –
Coils
Coil
111 117 7 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
112 117 6 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005484
Molecular function SNAP receptor activity Acting as a marker to identify a membrane and interacting selectively with one or more SNAREs on another membrane to mediate membrane fusion.
Subterm of
GO:0006886
Biological process Intracellular protein transport The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
Subterm of
Part of
GO:0016020
Cellular component Membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
Subterm of

Genome browser

LORE1 insertions 2

Expression data

Expression pattern

Expression pattern of Lj0g3v0109489.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0109489.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.