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Lj0g3v0116189.1

Overview

Field Value
Gene ID Lj0g3v0116189
Transcript ID Lj0g3v0116189.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: FACT complex subunit SSRP1-like [Glycine max] gi|356496334|ref|XP_003517023.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Pfam
PF03531
18 167 150 5.90E-39
IPR024954
PANTHER
PTHR13711:SF201
36 319 284 9.00E-55 –
PANTHER
PTHR13711
36 319 284 9.00E-55 –
SUPERFAMILY
SSF50729
82 315 234 1.84E-67
IPR011993
CDD
cd13230
83 216 134 6.09E-61 –
PRINTS
PR00887
95 111 17 4.10E-60
IPR000969
PRINTS
PR00887
117 133 17 4.10E-60
IPR000969
PRINTS
PR00887
140 156 17 4.10E-60
IPR000969
PRINTS
PR00887
205 218 14 4.10E-60
IPR000969
CDD
cd13231
218 317 100 1.47E-31 –
SMART
SM01287
224 317 94 1.10E-20
IPR013719
Pfam
PF08512
225 314 90 3.70E-18
IPR013719
PRINTS
PR00887
232 250 19 4.10E-60
IPR000969
PRINTS
PR00887
250 267 18 4.10E-60
IPR000969
PRINTS
PR00887
276 292 17 4.10E-60
IPR000969
PRINTS
PR00887
292 310 19 4.10E-60
IPR000969

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0005634
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Subterm of

Genome browser

LORE1 insertions 5

Expression data

Expression pattern

Expression pattern of Lj0g3v0116189.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0116189.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.