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Lj0g3v0117159.1

Overview

Field Value
Gene ID Lj0g3v0117159
Transcript ID Lj0g3v0117159.1
Related isoforms 2
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: cyclin-D-binding Myb-like transcription factor 1-like [Glycine max] gi|356548105|ref|XP_003542444.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 288 288 – –
ProSiteProfiles
PS50090
317 385 69 4.391
IPR017877
SMART
SM00717
321 392 72 1.20E-04
IPR001005
Gene3D
G3DSA:1.10.10.60
323 411 89 1.80E-07
IPR009057
PANTHER
PTHR10641:SF517
367 465 99 3.20E-48 –
PANTHER
PTHR10641
367 465 99 3.20E-48 –
ProSiteProfiles
PS51294
392 443 52 10.033
IPR017930
SMART
SM00717
394 441 48 3.90E-04
IPR001005
SUPERFAMILY
SSF46689
396 452 57 5.31E-09
IPR009057
CDD
cd00167
397 426 30 0.00126218 –
Pfam
PF13921
398 456 59 4.20E-12 –
Gene3D
G3DSA:1.10.10.60
412 448 37 6.30E-08
IPR009057
ProSiteProfiles
PS50090
440 509 70 7.306
IPR017877
SMART
SM00717
444 512 69 8.8
IPR001005
Gene3D
G3DSA:1.10.10.60
449 510 62 5.00E-05
IPR009057
PANTHER
PTHR10641
485 577 93 3.20E-48 –
PANTHER
PTHR10641:SF517
485 577 93 3.20E-48 –
SUPERFAMILY
SSF46689
489 569 81 5.01E-05
IPR009057
ProSiteProfiles
PS50090
511 564 54 7.445
IPR017877
SMART
SM00717
515 566 52 63
IPR001005

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

LORE1 insertions 1

Expression data

Expression pattern

Expression pattern of Lj0g3v0117159.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0117159.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.