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Lj0g3v0117159.2

Overview

Field Value
Gene ID Lj0g3v0117159
Transcript ID Lj0g3v0117159.2
Related isoforms 2
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: cyclin-D-binding Myb-like transcription factor 1-like [Glycine max] gi|356548105|ref|XP_003542444.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 181 181 – –
ProSiteProfiles
PS50090
210 278 69 4.391
IPR017877
SMART
SM00717
214 285 72 1.20E-04
IPR001005
Gene3D
G3DSA:1.10.10.60
216 304 89 1.10E-07
IPR009057
PANTHER
PTHR10641:SF517
260 358 99 3.20E-48 –
PANTHER
PTHR10641
260 358 99 3.20E-48 –
ProSiteProfiles
PS51294
285 336 52 10.033
IPR017930
SMART
SM00717
287 334 48 3.90E-04
IPR001005
SUPERFAMILY
SSF46689
289 345 57 4.14E-09
IPR009057
CDD
cd00167
290 319 30 0.0013426 –
Pfam
PF13921
291 349 59 3.20E-12 –
Gene3D
G3DSA:1.10.10.60
305 341 37 4.50E-08
IPR009057
ProSiteProfiles
PS50090
333 402 70 7.306
IPR017877
SMART
SM00717
337 405 69 8.8
IPR001005
Gene3D
G3DSA:1.10.10.60
342 403 62 4.00E-05
IPR009057
PANTHER
PTHR10641
378 470 93 3.20E-48 –
PANTHER
PTHR10641:SF517
378 470 93 3.20E-48 –
SUPERFAMILY
SSF46689
382 462 81 3.68E-05
IPR009057
ProSiteProfiles
PS50090
404 457 54 7.445
IPR017877
SMART
SM00717
408 459 52 63
IPR001005

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

LORE1 insertions 1

Expression data

Expression pattern

Expression pattern of Lj0g3v0117159.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0117159.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.