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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0129989 |
| Transcript ID | Lj0g3v0129989.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At1g03560, mitochondrial-like [Cicer arietinum] gi|502164550|ref|XP_004513160.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | – | – | |
| Phobius | 1 | 27 | 27 | – | – | |
| PANTHER | 1 | 11 | 11 | 3.70E-270 | – | |
| PANTHER | 1 | 11 | 11 | 3.70E-270 | – | |
| Phobius | 12 | 22 | 11 | – | – | |
| Phobius | 23 | 27 | 5 | – | – | |
| PANTHER | 28 | 551 | 524 | 3.70E-270 | – | |
| Phobius | 28 | 560 | 533 | – | – | |
| PANTHER | 28 | 551 | 524 | 3.70E-270 | – | |
| ProSiteProfiles | 91 | 125 | 35 | 9.514 | ||
| Pfam | 96 | 123 | 28 | 0.1 | ||
| ProSiteProfiles | 126 | 160 | 35 | 10.183 | ||
| TIGRFAM | 128 | 162 | 35 | 6.30E-06 | ||
| Pfam | 129 | 155 | 27 | 8.30E-04 | ||
| Pfam | 160 | 207 | 48 | 6.50E-15 | ||
| ProSiteProfiles | 161 | 195 | 35 | 13.088 | ||
| TIGRFAM | 163 | 197 | 35 | 1.80E-09 | ||
| ProSiteProfiles | 196 | 230 | 35 | 10.874 | ||
| TIGRFAM | 198 | 229 | 32 | 5.70E-06 | ||
| ProSiteProfiles | 231 | 265 | 35 | 10.008 | ||
| TIGRFAM | 234 | 266 | 33 | 5.10E-06 | ||
| Pfam | 234 | 263 | 30 | 0.0017 | ||
| Gene3D | 241 | 495 | 255 | 8.80E-12 | ||
| ProSiteProfiles | 266 | 300 | 35 | 13.033 | ||
| Pfam | 266 | 314 | 49 | 7.80E-16 | ||
| TIGRFAM | 268 | 302 | 35 | 1.70E-10 | ||
| SUPERFAMILY | 269 | 436 | 168 | 2.12E-09 | – | |
| ProSiteProfiles | 301 | 335 | 35 | 11.06 | ||
| TIGRFAM | 303 | 326 | 24 | 1.30E-05 | ||
| Pfam | 336 | 384 | 49 | 1.10E-16 | ||
| ProSiteProfiles | 336 | 370 | 35 | 13.735 | ||
| TIGRFAM | 338 | 371 | 34 | 2.00E-11 | ||
| ProSiteProfiles | 371 | 405 | 35 | 13.822 | ||
| TIGRFAM | 373 | 404 | 32 | 1.80E-10 | ||
| Pfam | 406 | 453 | 48 | 1.70E-09 | ||
| ProSiteProfiles | 406 | 440 | 35 | 11.224 | ||
| TIGRFAM | 408 | 442 | 35 | 7.60E-06 | ||
| ProSiteProfiles | 441 | 475 | 35 | 7.454 | ||
| ProSiteProfiles | 478 | 509 | 32 | 5.689 | ||
| Pfam | 482 | 498 | 17 | 0.17 | ||
| ProSiteProfiles | 510 | 544 | 35 | 5.196 | ||
| Pfam | 515 | 535 | 21 | 1.1 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj0g3v0129989.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0129989.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.