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Lj0g3v0130849.1

Overview

Field Value
Gene ID Lj0g3v0130849
Transcript ID Lj0g3v0130849.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: DNA mismatch repair protein MSH1, mitochondrial-like [Cicer arietinum] gi|502122529|ref|XP_004497789.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11361:SF82
1 208 208 1.30E-86 –
PANTHER
PTHR11361
1 208 208 1.30E-86 –
Pfam
PF00488
1 118 118 7.80E-20
IPR000432
SMART
SM00534
1 120 120 1.00E-08
IPR000432
Gene3D
G3DSA:3.40.50.300
1 119 119 8.30E-23
IPR027417
SUPERFAMILY
SSF52540
5 118 114 2.92E-13
IPR027417
ProSitePatterns
PS00486
15 31 17 –
IPR000432
SUPERFAMILY
SSF82771
226 286 61 3.01E-05
IPR000305

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0006298
Biological process Mismatch repair A system for the correction of errors in which an incorrect base, which cannot form hydrogen bonds with the corresponding base in the parent strand, is incorporated into the daughter strand. The mismatch repair system promotes genomic fidelity by repairing base-base mismatches, insertion-deletion loops and heterologies generated during DNA replication and recombination.
Subterm of
GO:0030983
Molecular function Mismatched DNA binding Interacting selectively and non-covalently with double-stranded DNA containing one or more mismatches.
Subterm of

Genome browser

LORE1 insertions 7

Expression data

Expression pattern

Expression pattern of Lj0g3v0130849.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0130849.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.