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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0133059 |
| Transcript ID | Lj0g3v0133059.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Sodium/calcium exchanger family protein / calcium-binding EF hand family protein isoform 2 [Theobroma cacao] gi|508721277|gb|EOY13174.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 6 | 6 | – | – | |
| SignalP | 1 | 24 | 24 | – | – | |
| Phobius | 1 | 24 | 24 | – | – | |
| TMHMM | 7 | 29 | 23 | – | – | |
| Phobius | 7 | 19 | 13 | – | – | |
| PANTHER | 10 | 380 | 371 | 0 | – | |
| PANTHER | 10 | 380 | 371 | 0 | – | |
| Phobius | 20 | 24 | 5 | – | – | |
| Phobius | 25 | 82 | 58 | – | – | |
| Phobius | 83 | 99 | 17 | – | – | |
| TMHMM | 83 | 105 | 23 | – | – | |
| Phobius | 100 | 110 | 11 | – | – | |
| Phobius | 111 | 132 | 22 | – | – | |
| Pfam | 114 | 268 | 155 | 8.20E-05 | ||
| TMHMM | 118 | 140 | 23 | – | – | |
| Phobius | 133 | 151 | 19 | – | – | |
| Phobius | 152 | 178 | 27 | – | – | |
| TMHMM | 155 | 177 | 23 | – | – | |
| Phobius | 179 | 216 | 38 | – | – | |
| Phobius | 217 | 234 | 18 | – | – | |
| TMHMM | 217 | 236 | 20 | – | – | |
| Phobius | 235 | 245 | 11 | – | – | |
| TMHMM | 246 | 268 | 23 | – | – | |
| Phobius | 246 | 268 | 23 | – | – | |
| Phobius | 269 | 552 | 284 | – | – | |
| Gene3D | 326 | 386 | 61 | 7.30E-19 | ||
| SUPERFAMILY | 337 | 393 | 57 | 2.59E-18 | ||
| Pfam | 347 | 377 | 31 | 7.70E-04 | ||
| ProSiteProfiles | 347 | 382 | 36 | 12.338 | ||
| SMART | 351 | 379 | 29 | 0.0025 | ||
| ProSitePatterns | 360 | 372 | 13 | – | ||
| PANTHER | 441 | 711 | 271 | 0 | – | |
| PANTHER | 441 | 711 | 271 | 0 | – | |
| Gene3D | 444 | 523 | 80 | 7.30E-19 | ||
| ProSiteProfiles | 445 | 480 | 36 | 10.748 | ||
| SUPERFAMILY | 447 | 516 | 70 | 2.59E-18 | ||
| SMART | 449 | 477 | 29 | 0.024 | ||
| Pfam | 449 | 511 | 63 | 7.10E-10 | ||
| CDD | 450 | 514 | 65 | 9.47E-09 | ||
| ProSitePatterns | 458 | 470 | 13 | – | ||
| ProSiteProfiles | 484 | 519 | 36 | 9.297 | ||
| SMART | 488 | 516 | 29 | 3.4 | ||
| ProSitePatterns | 497 | 509 | 13 | – | ||
| TMHMM | 552 | 574 | 23 | – | – | |
| Phobius | 553 | 574 | 22 | – | – | |
| Pfam | 560 | 703 | 144 | 5.10E-08 | ||
| Phobius | 575 | 585 | 11 | – | – | |
| TMHMM | 584 | 606 | 23 | – | – | |
| Phobius | 586 | 606 | 21 | – | – | |
| Phobius | 607 | 626 | 20 | – | – | |
| Phobius | 627 | 651 | 25 | – | – | |
| TMHMM | 631 | 653 | 23 | – | – | |
| Phobius | 652 | 662 | 11 | – | – | |
| Phobius | 663 | 680 | 18 | – | – | |
| TMHMM | 663 | 685 | 23 | – | – | |
| Phobius | 681 | 691 | 11 | – | – | |
| TMHMM | 692 | 711 | 20 | – | – | |
| Phobius | 692 | 711 | 20 | – | – | |
| Phobius | 712 | 712 | 1 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj0g3v0133059.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0133059.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.