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Lj0g3v0138089.1

Overview

Field Value
Gene ID Lj0g3v0138089
Transcript ID Lj0g3v0138089.1
Lotus japonicus genome version MG20 v3.0
Description DNA repair and recombination protein RAD54-like protein [Medicago truncatula] gi|357492817|ref|XP_003616697.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10799
19 271 253 2.20E-219 –
PANTHER
PTHR10799:SF660
19 271 253 2.20E-219 –
SUPERFAMILY
SSF52540
30 266 237 1.50E-27
IPR027417
SMART
SM00487
36 269 234 4.30E-12
IPR014001
Gene3D
G3DSA:3.40.50.300
38 250 213 8.40E-10
IPR027417
Pfam
PF00176
43 266 224 2.00E-17
IPR000330
ProSiteProfiles
PS51192
65 264 200 13.854
IPR014001
CDD
cd00046
73 246 174 2.52E-07 –
SUPERFAMILY
SSF52540
209 267 59 2.21E-32
IPR027417
PANTHER
PTHR10799:SF660
298 601 304 2.20E-219 –
PANTHER
PTHR10799
298 601 304 2.20E-219 –
Coils
Coil
347 367 21 – –
SUPERFAMILY
SSF52540
412 578 167 2.21E-32
IPR027417
CDD
cd00079
414 548 135 5.79E-15 –
Gene3D
G3DSA:3.40.50.300
422 549 128 2.60E-12
IPR027417
Pfam
PF00271
422 540 119 4.30E-12
IPR001650
ProSiteProfiles
PS51194
425 592 168 10.877
IPR001650
SMART
SM00490
454 540 87 1.10E-07
IPR001650

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj0g3v0138089.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0138089.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.