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Lj0g3v0181289.1

Overview

Field Value
Gene ID Lj0g3v0181289
Transcript ID Lj0g3v0181289.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: pentatricopeptide repeat-containing protein At2g15630, mitochondrial-like [Glycine max] gi|356544498|ref|XP_003540687.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
ProSiteProfiles
PS51375
1 36 36 5.7
IPR002885
PANTHER
PTHR24015
2 344 343 3.50E-148 –
Pfam
PF12854
34 65 32 1.30E-10
IPR002885
ProSiteProfiles
PS51375
37 71 35 12.507
IPR002885
TIGRFAM
TIGR00756
39 72 34 2.70E-08
IPR002885
Gene3D
G3DSA:1.25.40.10
40 343 304 4.50E-08
IPR011990
ProSiteProfiles
PS51375
74 108 35 10.764
IPR002885
Pfam
PF01535
77 106 30 3.90E-05
IPR002885
TIGRFAM
TIGR00756
77 110 34 1.00E-06
IPR002885
ProSiteProfiles
PS51375
109 143 35 12.353
IPR002885
TIGRFAM
TIGR00756
111 144 34 1.60E-07
IPR002885
Pfam
PF13041
111 157 47 2.30E-13
IPR002885
SUPERFAMILY
SSF81901
119 291 173 2.59E-09 –
ProSiteProfiles
PS51375
144 178 35 11.564
IPR002885
TIGRFAM
TIGR00756
146 178 33 5.20E-08
IPR002885
ProSiteProfiles
PS51375
179 213 35 12.781
IPR002885
Pfam
PF13041
180 226 47 2.40E-15
IPR002885
TIGRFAM
TIGR00756
181 215 35 1.00E-09
IPR002885
Coils
Coil
189 209 21 – –
ProSiteProfiles
PS51375
214 248 35 12.606
IPR002885
TIGRFAM
TIGR00756
216 249 34 6.00E-10
IPR002885
Pfam
PF12854
246 276 31 7.10E-07
IPR002885
ProSiteProfiles
PS51375
249 283 35 11.29
IPR002885
TIGRFAM
TIGR00756
251 284 34 1.30E-08
IPR002885
Pfam
PF13041
283 330 48 1.70E-14
IPR002885
ProSiteProfiles
PS51375
284 318 35 12.167
IPR002885
TIGRFAM
TIGR00756
286 320 35 4.50E-09
IPR002885
ProSiteProfiles
PS51375
319 344 26 9.273
IPR002885
TIGRFAM
TIGR00756
321 344 24 5.40E-04
IPR002885

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj0g3v0181289.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0181289.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.