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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0186219 |
| Transcript ID | Lj0g3v0186219.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Ribonuclease III family protein [Theobroma cacao] gi|508699738|gb|EOX91634.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 266 | 266 | – | – | |
| PANTHER | 10 | 538 | 529 | 0 | – | |
| PANTHER | 10 | 538 | 529 | 0 | – | |
| SUPERFAMILY | 135 | 309 | 175 | 6.10E-21 | ||
| CDD | 171 | 302 | 132 | 5.98E-27 | ||
| Gene3D | 171 | 297 | 127 | 9.20E-14 | ||
| SMART | 171 | 306 | 136 | 4.00E-23 | ||
| ProSiteProfiles | 172 | 285 | 114 | 15.106 | ||
| Phobius | 267 | 287 | 21 | – | – | |
| Phobius | 288 | 538 | 251 | – | – | |
| CDD | 403 | 528 | 126 | 6.85E-20 | ||
| SUPERFAMILY | 403 | 529 | 127 | 1.48E-14 | ||
| Gene3D | 403 | 528 | 126 | 5.10E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ribonuclease III activity | Catalysis of the endonucleolytic cleavage of RNA with 5'-phosphomonoesters and 3'-OH termini; makes two staggered cuts in both strands of dsRNA, leaving a 3' overhang of 2 nt. | ||
| Biological process | RNA processing | Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. |
Expression pattern of Lj0g3v0186219.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0186219.1, powered by CORGI.
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