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Lj0g3v0215649.1

Overview

Field Value
Gene ID Lj0g3v0215649
Transcript ID Lj0g3v0215649.1
Lotus japonicus genome version MG20 v3.0
Description DNA repair and recombination protein RAD54-like protein [Medicago truncatula] gi|357503527|ref|XP_003622052.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 69 69 – –
PANTHER
PTHR10799:SF660
19 34 16 9.80E-232 –
PANTHER
PTHR10799
19 34 16 9.80E-232 –
SUPERFAMILY
SSF52540
69 324 256 6.97E-30
IPR027417
PANTHER
PTHR10799
84 329 246 9.80E-232 –
PANTHER
PTHR10799:SF660
84 329 246 9.80E-232 –
Gene3D
G3DSA:3.40.50.300
91 316 226 3.20E-12
IPR027417
SMART
SM00487
94 330 237 1.30E-18
IPR014001
Pfam
PF00176
100 329 230 2.00E-18
IPR000330
ProSiteProfiles
PS51192
123 322 200 13.753
IPR014001
CDD
cd00046
131 304 174 7.90E-09 –
SUPERFAMILY
SSF52540
267 325 59 3.78E-36
IPR027417
PANTHER
PTHR10799:SF660
356 661 306 9.80E-232 –
PANTHER
PTHR10799
356 661 306 9.80E-232 –
SUPERFAMILY
SSF52540
472 638 167 3.78E-36
IPR027417
Gene3D
G3DSA:3.40.50.300
476 609 134 1.80E-14
IPR027417
CDD
cd00079
482 608 127 1.30E-17 –
Pfam
PF00271
484 599 116 1.10E-14
IPR001650
ProSiteProfiles
PS51194
488 652 165 12.64
IPR001650
SMART
SM00490
515 600 86 5.20E-12
IPR001650
MobiDBLite
mobidb-lite
660 681 22 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj0g3v0215649.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0215649.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.