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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0219909 |
| Transcript ID | Lj0g3v0219909.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pumilio homolog 2-like [Cicer arietinum] gi|502081839|ref|XP_004486985.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 805 | 804 | 0 | – | |
| PANTHER | 2 | 805 | 804 | 0 | – | |
| MobiDBLite | 112 | 131 | 20 | – | – | |
| Pfam | 127 | 300 | 174 | 2.90E-49 | ||
| MobiDBLite | 206 | 289 | 84 | – | – | |
| Pfam | 303 | 478 | 176 | 4.60E-88 | ||
| ProSiteProfiles | 459 | 791 | 333 | 120.77 | ||
| Gene3D | 461 | 794 | 334 | 1.90E-132 | ||
| SUPERFAMILY | 462 | 788 | 327 | 1.38E-111 | ||
| CDD | 475 | 787 | 313 | 1.60E-163 | ||
| Pfam | 479 | 509 | 31 | 1.30E-04 | ||
| ProSiteProfiles | 479 | 514 | 36 | 10.787 | ||
| SMART | 479 | 514 | 36 | 0.0037 | ||
| SMART | 515 | 550 | 36 | 1.60E-06 | ||
| ProSiteProfiles | 515 | 550 | 36 | 10.694 | ||
| Pfam | 518 | 546 | 29 | 3.00E-06 | ||
| SMART | 551 | 586 | 36 | 7.60E-07 | ||
| ProSiteProfiles | 551 | 586 | 36 | 10.46 | ||
| Pfam | 552 | 582 | 31 | 1.40E-05 | ||
| ProSiteProfiles | 587 | 622 | 36 | 9.924 | ||
| SMART | 587 | 622 | 36 | 4.50E-07 | ||
| Pfam | 592 | 620 | 29 | 5.50E-06 | ||
| SMART | 623 | 659 | 37 | 2.20E-06 | ||
| ProSiteProfiles | 623 | 659 | 37 | 10.11 | ||
| Pfam | 624 | 655 | 32 | 1.60E-07 | ||
| ProSiteProfiles | 660 | 695 | 36 | 12 | ||
| SMART | 660 | 695 | 36 | 2.50E-05 | ||
| Pfam | 663 | 691 | 29 | 3.10E-05 | ||
| SMART | 696 | 727 | 32 | 9.9 | ||
| ProSiteProfiles | 696 | 718 | 23 | 6.611 | ||
| Pfam | 697 | 722 | 26 | 1.60E-04 | ||
| ProSiteProfiles | 724 | 765 | 42 | 10.017 | ||
| SMART | 730 | 765 | 36 | 8.70E-07 | ||
| Pfam | 738 | 764 | 27 | 1.60E-06 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of Lj0g3v0219909.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0219909.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.