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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0239469 |
| Transcript ID | Lj0g3v0239469.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At5g56310-like [Cicer arietinum] gi|502112518|ref|XP_004494357.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 54 | 482 | 429 | 1.60E-273 | – | |
| PANTHER | 54 | 482 | 429 | 1.60E-273 | – | |
| ProSiteProfiles | 97 | 134 | 38 | 6.182 | ||
| ProSiteProfiles | 170 | 201 | 32 | 6.818 | ||
| Pfam | 202 | 247 | 46 | 8.10E-08 | ||
| ProSiteProfiles | 202 | 236 | 35 | 11.433 | ||
| TIGRFAM | 204 | 237 | 34 | 5.20E-05 | ||
| Gene3D | 204 | 336 | 133 | 1.30E-05 | ||
| SUPERFAMILY | 217 | 244 | 28 | 5.14E-05 | ||
| ProSiteProfiles | 237 | 271 | 35 | 6.489 | ||
| ProSiteProfiles | 272 | 302 | 31 | 8.67 | ||
| TIGRFAM | 277 | 303 | 27 | 0.0025 | ||
| SUPERFAMILY | 279 | 335 | 57 | 5.14E-05 | ||
| Pfam | 302 | 349 | 48 | 1.30E-09 | ||
| ProSiteProfiles | 303 | 337 | 35 | 11.422 | ||
| TIGRFAM | 305 | 338 | 34 | 3.10E-07 | ||
| ProSiteProfiles | 338 | 372 | 35 | 6.237 | ||
| SUPERFAMILY | 374 | 462 | 89 | 5.14E-05 | ||
| ProSiteProfiles | 375 | 409 | 35 | 7.761 | ||
| Pfam | 379 | 402 | 24 | 0.11 | ||
| Gene3D | 406 | 461 | 56 | 1.30E-05 | ||
| ProSiteProfiles | 441 | 475 | 35 | 7.509 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj0g3v0239469.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0239469.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.