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Lj0g3v0241289.1

Overview

Field	Value
Gene ID	Lj0g3v0241289
Transcript ID	Lj0g3v0241289.1
Related isoforms 1	Lj0g3v0241289.2
Lotus japonicus genome version	MG20 v3.0
Description	PREDICTED: myosin-11-like isoform X1 [Cicer arietinum] gi\|502137628\|ref\|XP_004503147.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	24	24	–	–
PANTHER	PTHR21596:SF25 View details on PTHR21596:SF25 Search for proteins/transripts with this domain View external data on PTHR21596:SF25	15	435	421	2.10E-249	–
PANTHER	PTHR21596 View details on PTHR21596 Search for proteins/transripts with this domain View external data on PTHR21596	15	435	421	2.10E-249	–
Pfam	PF03470 View details on PF03470 Search for proteins/transripts with this domain View external data on PF03470	43	86	44	3.50E-19	IPR005381 Show description in modal box View details on IPR005381 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	94	113	20	–	–
Pfam	PF03468 View details on PF03468 Search for proteins/transripts with this domain View external data on PF03468	116	227	112	7.10E-39	IPR005380 Show description in modal box View details on IPR005380 Search for proteins/transripts with this domain View on EBI InterPro Service
CDD	cd12266 View details on cd12266 Search for proteins/transripts with this domain View external data on cd12266	119	226	108	4.09E-40	IPR005380 Show description in modal box View details on IPR005380 Search for proteins/transripts with this domain View on EBI InterPro Service
Coils	Coil View details on Coil Search for proteins/transripts with this domain	292	319	28	–	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	328	360	33	–	–
Coils	Coil View details on Coil Search for proteins/transripts with this domain	391	435	45	–	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0031047 View details of GO:0031047 AmiGO InterPro QuickGO	Biological process	Gene silencing by RNA	Any process in which RNA molecules inactivate expression of target genes.	Subterm of View details of GO:0016458

Genome browser

Expression data

Expression pattern

Expression pattern of Lj0g3v0241289.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0241289.1, powered by CORGI.

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