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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR005381
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 23 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.841s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0013419.1
n.a. Transcription factor X1-like protein [Medicago truncatula] gi|357492245|ref|XP_003616411.1| chr0 5061714 5069034 +
2 domain predictions
1 GO term
Lj0g3v0157459.1
n.a. Transcription factor X1-like protein [Medicago truncatula] gi|357492245|ref|XP_003616411.1| chr0 73757860 73761833 +
2 domain predictions
1 GO term
Lj0g3v0241289.1
n.a. PREDICTED: myosin-11-like isoform X1 [Cicer arietinum] gi|502137628|ref|XP_004503147.1| chr0 125145050 125160174 +
2 domain predictions
1 GO term
Lj0g3v0241289.2
n.a. PREDICTED: myosin-11-like isoform X1 [Cicer arietinum] gi|502137628|ref|XP_004503147.1| chr0 125145050 125153110 +
2 domain predictions
1 GO term
Lj1g3v1386430.1
n.a. reduced leaflet 1 [Lotus japonicus] gi|225030812|gb|ACN79519.1| chr1 16926801 16934989 -
2 domain predictions
1 GO term
Lj1g3v1386440.1
n.a. reduced leaflet 1 [Lotus japonicus] gi|225030812|gb|ACN79519.1| chr1 16926977 16933426 -
2 domain predictions
1 GO term
Lj2g3v2598830.1
n.a. Transcription factor X1-like protein [Medicago truncatula] gi|357492245|ref|XP_003616411.1| chr2 35516941 35517783 +
2 domain predictions
1 GO term
Lj3g3v2168470.1
n.a. XH/XS domain-containing protein [Theobroma cacao] gi|508778768|gb|EOY26024.1| chr3 26838224 26846273 -
2 domain predictions
1 GO term
Lj6g3v1177220.1
n.a. XH/XS domain-containing protein [Theobroma cacao] gi|508778768|gb|EOY26024.1| chr6 14352637 14356551 -
2 domain predictions
1 GO term
LotjaGi1g1v0089300.1
n.a. XH/XS domain protein; TAIR: AT3G48670.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q8VZ79|IDN2_ARATH Protein INVOLVED IN DE NOVO 2; TrEMBL-Plants: tr|K7M5B9|K7M5B9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0089300 LjG1.1_chr1 13023017 13031570 -
2 domain predictions
1 GO term
LotjaGi1g1v0089300.2
n.a. XH/XS domain protein; TAIR: AT3G48670.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q8VZ79|IDN2_ARATH Protein INVOLVED IN DE NOVO 2; TrEMBL-Plants: tr|K7M5B9|K7M5B9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0089300 LjG1.1_chr1 13023386 13031537 -
2 domain predictions
1 GO term
LotjaGi1g1v0330500.1
n.a. Protein SUPPRESSOR OF GENE SILENCING 3; TAIR: AT5G23570.1 XS domain-containing protein / XS zinc finger domain-containing protein-like protein; Swiss-Prot: sp|Q9LDX1|SGS3_ARATH Protein SUPPRESSOR OF GENE SILENCING 3; TrEMBL-Plants: tr|D3GBV0|D3GBV0_LOTJA Reduced leaflet 1; Found in the gene: LotjaGi1g1v0330500 LjG1.1_chr1 78619684 78628963 -
2 domain predictions
1 GO term
LotjaGi1g1v0575900.2
n.a. XH/XS domain-containing family protein; TAIR: AT1G13790.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q9LMH6|FDM4_ARATH Factor of DNA methylation 4; TrEMBL-Plants: tr|A0A0S3SGA0|A0A0S3SGA0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0575900 LjG1.1_chr1 111265141 111273361 +
2 domain predictions
1 GO term
LotjaGi3g1v0350700.2
n.a. XH/XS domain protein; TAIR: AT1G15910.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q9S9P3|FDM1_ARATH Factor of DNA methylation 1; TrEMBL-Plants: tr|I1KGU5|I1KGU5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0350700 LjG1.1_chr3 72958961 72967005 -
2 domain predictions
1 GO term
LotjaGi3g1v0350700.3
n.a. XH/XS domain protein; TAIR: AT1G15910.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q9S9P3|FDM1_ARATH Factor of DNA methylation 1; TrEMBL-Plants: tr|I1KGU5|I1KGU5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0350700 LjG1.1_chr3 72958965 72966798 -
2 domain predictions
1 GO term
LotjaGi3g1v0350700.4
n.a. XH/XS domain protein; TAIR: AT1G15910.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q9S9P3|FDM1_ARATH Factor of DNA methylation 1; TrEMBL-Plants: tr|I1KGU5|I1KGU5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0350700 LjG1.1_chr3 72959798 72965992 -
2 domain predictions
1 GO term
LotjaGi3g1v0350900.1
n.a. XH/XS domain protein; TAIR: AT1G15910.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q9S9P3|FDM1_ARATH Factor of DNA methylation 1; TrEMBL-Plants: tr|I1KGU5|I1KGU5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0350900 LjG1.1_chr3 72971037 72977190 -
2 domain predictions
1 GO term
LotjaGi6g1v0061200.1
n.a. XH/XS domain protein; TAIR: AT3G48670.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q8VZ79|IDN2_ARATH Protein INVOLVED IN DE NOVO 2; TrEMBL-Plants: tr|I1LMF4|I1LMF4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0061200 LjG1.1_chr6 11130121 11138984 +
2 domain predictions
1 GO term
LotjaGi6g1v0061200.2
n.a. XH/XS domain protein; TAIR: AT3G48670.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q8VZ79|IDN2_ARATH Protein INVOLVED IN DE NOVO 2; TrEMBL-Plants: tr|I1LMF4|I1LMF4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0061200 LjG1.1_chr6 11131424 11137644 +
2 domain predictions
1 GO term
LotjaGi6g1v0061300.2
n.a. XH/XS domain protein; TAIR: AT3G48670.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q8VZ79|IDN2_ARATH Protein INVOLVED IN DE NOVO 2; TrEMBL-Plants: tr|K7LRJ4|K7LRJ4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0061300 LjG1.1_chr6 11139672 11153642 +
2 domain predictions
1 GO term
LotjaGi6g1v0061300.3
n.a. XH/XS domain protein; TAIR: AT3G48670.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q8VZ79|IDN2_ARATH Protein INVOLVED IN DE NOVO 2; TrEMBL-Plants: tr|K7LRJ4|K7LRJ4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0061300 LjG1.1_chr6 11139855 11150919 +
2 domain predictions
1 GO term
LotjaGi6g1v0061300.4
n.a. XH/XS domain protein; TAIR: AT3G48670.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q8VZ79|IDN2_ARATH Protein INVOLVED IN DE NOVO 2; TrEMBL-Plants: tr|K7LRJ4|K7LRJ4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0061300 LjG1.1_chr6 11139961 11149816 +
2 domain predictions
1 GO term
LotjaGi6g1v0223200.1
n.a. XH/XS domain-containing protein; TAIR: AT1G80790.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q9SAI1|FDM5_ARATH Factor of DNA methylation 5; TrEMBL-Plants: tr|I1MIE9|I1MIE9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0223200 LjG1.1_chr6 52781444 52793069 -
2 domain predictions
1 GO term