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IPR005381 is a Zinc finger-XS domain.
<p>This domain is a putative nucleic acid binding zinc finger and is found at the N terminus of proteins that also contain an adjacent XS domain [interpro:IPR005380] and in some proteins a C-terminal XH domain [interpro:IPR005379] [[cite:PUB00072951]]. Proteins containing this domain include protein SUPPRESSOR OF GENE SILENCING 3 (SGS3), which is required for post-transcriptional gene silencing and natural virus resistance [[cite:PUB00066818], [cite:PUB00066819]].</p>
This description is obtained from EB-eye REST.
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Gene silencing by RNA | Any process in which RNA molecules inactivate expression of target genes. |
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | Transcription factor X1-like protein [Medicago truncatula] gi|357492245|ref|XP_003616411.1| | 10 | ||
| – | Transcription factor X1-like protein [Medicago truncatula] gi|357492245|ref|XP_003616411.1| | 10 | ||
| – | PREDICTED: myosin-11-like isoform X1 [Cicer arietinum] gi|502137628|ref|XP_004503147.1| | 9 | ||
| – | PREDICTED: myosin-11-like isoform X1 [Cicer arietinum] gi|502137628|ref|XP_004503147.1| | 11 | ||
| – | Reduced leaflet 1 [Lotus japonicus] gi|225030812|gb|ACN79519.1| | 9 | ||
| – | Reduced leaflet 1 [Lotus japonicus] gi|225030812|gb|ACN79519.1| | 9 | ||
| – | Transcription factor X1-like protein [Medicago truncatula] gi|357492245|ref|XP_003616411.1| | 4 | ||
| – | XH/XS domain-containing protein [Theobroma cacao] gi|508778768|gb|EOY26024.1| | 11 | ||
| – | XH/XS domain-containing protein [Theobroma cacao] gi|508778768|gb|EOY26024.1| | 12 | ||
| – | XH/XS domain protein; TAIR: AT3G48670.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q8VZ79|IDN2_ARATH Protein INVOLVED IN DE NOVO 2; TrEMBL-Plants: tr|K7M5B9|K7M5B9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0089300 | 12 | ||
| – | XH/XS domain protein; TAIR: AT3G48670.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q8VZ79|IDN2_ARATH Protein INVOLVED IN DE NOVO 2; TrEMBL-Plants: tr|K7M5B9|K7M5B9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0089300 | 12 | ||
| – | Protein SUPPRESSOR OF GENE SILENCING 3; TAIR: AT5G23570.1 XS domain-containing protein / XS zinc finger domain-containing protein-like protein; Swiss-Prot: sp|Q9LDX1|SGS3_ARATH Protein SUPPRESSOR OF GENE SILENCING 3; TrEMBL-Plants: tr|D3GBV0|D3GBV0_LOTJA Reduced leaflet 1; Found in the gene: LotjaGi1g1v0330500 | 11 | ||
| – | XH/XS domain-containing family protein; TAIR: AT1G13790.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q9LMH6|FDM4_ARATH Factor of DNA methylation 4; TrEMBL-Plants: tr|A0A0S3SGA0|A0A0S3SGA0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0575900 | 13 | ||
| – | XH/XS domain protein; TAIR: AT1G15910.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q9S9P3|FDM1_ARATH Factor of DNA methylation 1; TrEMBL-Plants: tr|I1KGU5|I1KGU5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0350700 | 13 | ||
| – | XH/XS domain protein; TAIR: AT1G15910.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q9S9P3|FDM1_ARATH Factor of DNA methylation 1; TrEMBL-Plants: tr|I1KGU5|I1KGU5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0350700 | 13 | ||
| – | XH/XS domain protein; TAIR: AT1G15910.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q9S9P3|FDM1_ARATH Factor of DNA methylation 1; TrEMBL-Plants: tr|I1KGU5|I1KGU5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0350700 | 13 | ||
| – | XH/XS domain protein; TAIR: AT1G15910.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q9S9P3|FDM1_ARATH Factor of DNA methylation 1; TrEMBL-Plants: tr|I1KGU5|I1KGU5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0350900 | 13 | ||
| – | XH/XS domain protein; TAIR: AT3G48670.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q8VZ79|IDN2_ARATH Protein INVOLVED IN DE NOVO 2; TrEMBL-Plants: tr|I1LMF4|I1LMF4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0061200 | 13 | ||
| – | XH/XS domain protein; TAIR: AT3G48670.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q8VZ79|IDN2_ARATH Protein INVOLVED IN DE NOVO 2; TrEMBL-Plants: tr|I1LMF4|I1LMF4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0061200 | 13 | ||
| – | XH/XS domain protein; TAIR: AT3G48670.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q8VZ79|IDN2_ARATH Protein INVOLVED IN DE NOVO 2; TrEMBL-Plants: tr|K7LRJ4|K7LRJ4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0061300 | 12 | ||
| – | XH/XS domain protein; TAIR: AT3G48670.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q8VZ79|IDN2_ARATH Protein INVOLVED IN DE NOVO 2; TrEMBL-Plants: tr|K7LRJ4|K7LRJ4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0061300 | 12 | ||
| – | XH/XS domain protein; TAIR: AT3G48670.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q8VZ79|IDN2_ARATH Protein INVOLVED IN DE NOVO 2; TrEMBL-Plants: tr|K7LRJ4|K7LRJ4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0061300 | 12 | ||
| – | XH/XS domain-containing protein; TAIR: AT1G80790.1 XH/XS domain-containing protein; Swiss-Prot: sp|Q9SAI1|FDM5_ARATH Factor of DNA methylation 5; TrEMBL-Plants: tr|I1MIE9|I1MIE9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0223200 | 14 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| cd06456 | CDD | 1 | 4.35 |