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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0245039 |
| Transcript ID | Lj0g3v0245039.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: DEAD-box ATP-dependent RNA helicase 7-like [Glycine max] gi|356535937|ref|XP_003536498.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 2 | 2 | – | – | |
| Phobius | 1 | 15 | 15 | – | – | |
| MobiDBLite | 1 | 106 | 106 | – | – | |
| Phobius | 3 | 10 | 8 | – | – | |
| Phobius | 11 | 15 | 5 | – | – | |
| PANTHER | 14 | 367 | 354 | 2.50E-161 | – | |
| PANTHER | 14 | 367 | 354 | 2.50E-161 | – | |
| Phobius | 16 | 367 | 352 | – | – | |
| Gene3D | 98 | 345 | 248 | 6.30E-69 | ||
| SUPERFAMILY | 112 | 322 | 211 | 1.25E-57 | ||
| ProSiteProfiles | 114 | 142 | 29 | 7.099 | ||
| CDD | 117 | 322 | 206 | 2.69E-71 | – | |
| SMART | 133 | 345 | 213 | 6.60E-48 | ||
| Pfam | 138 | 315 | 178 | 7.50E-48 | ||
| ProSiteProfiles | 145 | 327 | 183 | 27.504 | ||
| ProSitePatterns | 271 | 279 | 9 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of Lj0g3v0245039.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0245039.2, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.