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Lj0g3v0246909.1

Overview

Field Value
Gene ID Lj0g3v0246909
Transcript ID Lj0g3v0246909.1
Lotus japonicus genome version MG20 v3.0
Description Myb-like protein AA [Medicago truncatula] gi|357487099|ref|XP_003613837.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
ProSiteProfiles
PS51257
1 23 23 5 –
MobiDBLite
mobidb-lite
89 132 44 – –
PANTHER
PTHR10641:SF473
113 417 305 1.90E-122 –
PANTHER
PTHR10641
113 417 305 1.90E-122 –
ProSiteProfiles
PS51294
137 188 52 17.17
IPR017930
SMART
SM00717
141 190 50 2.90E-14
IPR001005
SUPERFAMILY
SSF46689
142 235 94 8.99E-28
IPR009057
Pfam
PF00249
142 187 46 9.80E-16
IPR001005
Gene3D
G3DSA:1.10.10.60
143 195 53 2.00E-25
IPR009057
CDD
cd00167
145 186 42 6.69E-13 –
ProSiteProfiles
PS51294
189 243 55 26.929
IPR017930
SMART
SM00717
193 241 49 1.80E-14
IPR001005
Pfam
PF00249
194 236 43 2.70E-14
IPR001005
Gene3D
G3DSA:1.10.10.60
196 242 47 1.70E-20
IPR009057
CDD
cd00167
196 236 41 1.96E-11 –
MobiDBLite
mobidb-lite
258 281 24 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

LORE1 insertions 11

Expression data

Expression pattern

Expression pattern of Lj0g3v0246909.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0246909.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.