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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0247459 |
| Transcript ID | Lj0g3v0247459.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | extensin [Brassica napus] gi|22001410|gb|AAM88422.1|AF527384_1 |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 28 | 28 | – | – | |
| SignalP | 1 | 28 | 28 | – | – | |
| SignalP | 1 | 28 | 28 | – | – | |
| Phobius | 1 | 7 | 7 | – | – | |
| Phobius | 8 | 19 | 12 | – | – | |
| Phobius | 20 | 28 | 9 | – | – | |
| Pfam | 29 | 66 | 38 | 2.80E-05 | ||
| Phobius | 29 | 328 | 300 | – | – | |
| PRINTS | 29 | 50 | 22 | 1.70E-11 | – | |
| PRINTS | 50 | 66 | 17 | 1.70E-11 | – | |
| Pfam | 54 | 101 | 48 | 6.80E-05 | ||
| PRINTS | 75 | 92 | 18 | 1.70E-11 | – | |
| PRINTS | 93 | 118 | 26 | 1.70E-11 | – | |
| MobiDBLite | 155 | 180 | 26 | – | – | |
| MobiDBLite | 251 | 274 | 24 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Structural constituent of cell wall | The action of a molecule that contributes to the structural integrity of a cell wall. | ||
| Biological process | Plant-type cell wall organization | A process that results in the assembly and arrangement of constituent parts of the cellulose and pectin-containing cell wall, or in the disassembly of the cellulose and pectin-containing cell wall. This process is carried out at the cellular level. An example of this process is found in Arabidopsis thaliana. |
Expression pattern of Lj0g3v0247459.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0247459.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.