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IPR006706 is a Extensin domain.
<p>Extensins shares protein sequence similarity with hydroxyproline-rich glycoproteins (HRGPs) found in the plant extracellular matrix. They form a structural component which strengthens the primary cell wall; they can account for up to 20% of the dry weight of the cell wall. The key to the role of HRGPs in cell wall self-assembly and cell extension lies in their chemistry, which is dependent on extensive post-translational modifications (PTMs): hydroxylation, glycosylation, and cross-linking. Repetitive peptide motifs characterise HRGPs [[cite:PUB00066811]].</p>
This description is obtained from EB-eye REST.
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Structural constituent of cell wall | The action of a molecule that contributes to the structural integrity of a cell wall. | ||
| Biological process | Plant-type cell wall organization | A process that results in the assembly and arrangement of constituent parts of the cellulose and pectin-containing cell wall, or in the disassembly of the cellulose and pectin-containing cell wall. This process is carried out at the cellular level. An example of this process is found in Arabidopsis thaliana. |
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | Extensin [Brassica napus] gi|22001410|gb|AAM88422.1|AF527384_1 | 11 | ||
| – | Hydroxyproline-rich glycoprotein [Solanum tuberosum] gi|24745591|dbj|BAC23028.1| | 12 | ||
| – | 12 | |||
| – | Hydroxyproline-rich glycoprotein [Solanum tuberosum] gi|24745591|dbj|BAC23028.1| | 3 | ||
| – | Extensin 3; TAIR: AT1G21310.1 extensin 3; Swiss-Prot: sp|Q9FS16|EXTN3_ARATH Extensin-3; TrEMBL-Plants: tr|A0A176WBI8|A0A176WBI8_MARPO Uncharacterized protein; Found in the gene: LotjaGi2g1v0134100_LC | 13 | ||
| – | Extensin 3; TAIR: AT1G21310.1 extensin 3; Swiss-Prot: sp|Q9FS16|EXTN3_ARATH Extensin-3; TrEMBL-Plants: tr|A0A176WBI8|A0A176WBI8_MARPO Uncharacterized protein; Found in the gene: LotjaGi2g1v0134100_LC | 13 | ||
| – | Extensin; TAIR: AT1G21310.1 extensin 3; Swiss-Prot: sp|Q9FS16|EXTN3_ARATH Extensin-3; TrEMBL-Plants: tr|A0A176WBI8|A0A176WBI8_MARPO Uncharacterized protein; Found in the gene: LotjaGi2g1v0134300 | 13 | ||
| – | Extensin 3; TAIR: AT1G21310.1 extensin 3; Swiss-Prot: sp|Q9FS16|EXTN3_ARATH Extensin-3; TrEMBL-Plants: tr|A0A176WBI8|A0A176WBI8_MARPO Uncharacterized protein; Found in the gene: LotjaGi2g1v0134300 | 12 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| mobidb-lite | MobiDBLite | 1 | 12.50 |