Domain Predictions — View

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PF04554

Source: Pfam

Description

Extensin-like region

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0005199 View details of GO:0005199 AmiGO InterPro QuickGO	Molecular function	Structural constituent of cell wall	The action of a molecule that contributes to the structural integrity of a cell wall.	Subterm of GO:0005198
GO:0009664 View details of GO:0009664 AmiGO InterPro QuickGO	Biological process	Plant-type cell wall organization	A process that results in the assembly and arrangement of constituent parts of the cellulose and pectin-containing cell wall, or in the disassembly of the cellulose and pectin-containing cell wall. This process is carried out at the cellular level. An example of this process is found in Arabidopsis thaliana.	Subterm of GO:0071555 GO:0071669

Associated Lotus transcripts 8

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0247459.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Extensin [Brassica napus] gi\|22001410\|gb\|AAM88422.1\|AF527384_1	Domains IPR006706 NON_CYTOPLASMIC_DOMAIN PF04554 PR01217 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SignalP-TM_GRAM_POSITIVE SignalP-noTM_EUK mobidb-lite	11
Lj2g3v0264020.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Hydroxyproline-rich glycoprotein [Solanum tuberosum] gi\|24745591\|dbj\|BAC23028.1\|	Domains IPR006706 NON_CYTOPLASMIC_DOMAIN PF04554 PR01217 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SignalP-TM_GRAM_POSITIVE SignalP-noTM_EUK SignalP-noTM_GRAM_NEGATIVE mobidb-lite	12
Lj2g3v0264030.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–		Domains IPR006706 NON_CYTOPLASMIC_DOMAIN PF04554 PR01217 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SignalP-TM_GRAM_POSITIVE SignalP-noTM_EUK SignalP-noTM_GRAM_NEGATIVE mobidb-lite	12
Lj2g3v0264280.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Hydroxyproline-rich glycoprotein [Solanum tuberosum] gi\|24745591\|dbj\|BAC23028.1\|	Domains IPR006706 PF04554 mobidb-lite	3
LotjaGi2g1v0134100_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Extensin 3; TAIR: AT1G21310.1 extensin 3; Swiss-Prot: sp\|Q9FS16\|EXTN3_ARATH Extensin-3; TrEMBL-Plants: tr\|A0A176WBI8\|A0A176WBI8_MARPO Uncharacterized protein; Found in the gene: LotjaGi2g1v0134100_LC	Domains IPR006706 NON_CYTOPLASMIC_DOMAIN PF04554 PR01217 PTHR36586 PTHR36586:SF9 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SignalP-TM SignalP-noTM mobidb-lite	13
LotjaGi2g1v0134100_LC.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Extensin 3; TAIR: AT1G21310.1 extensin 3; Swiss-Prot: sp\|Q9FS16\|EXTN3_ARATH Extensin-3; TrEMBL-Plants: tr\|A0A176WBI8\|A0A176WBI8_MARPO Uncharacterized protein; Found in the gene: LotjaGi2g1v0134100_LC	Domains IPR006706 NON_CYTOPLASMIC_DOMAIN PF04554 PR01217 PTHR36586 PTHR36586:SF9 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SignalP-TM SignalP-noTM mobidb-lite	13
LotjaGi2g1v0134300.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Extensin; TAIR: AT1G21310.1 extensin 3; Swiss-Prot: sp\|Q9FS16\|EXTN3_ARATH Extensin-3; TrEMBL-Plants: tr\|A0A176WBI8\|A0A176WBI8_MARPO Uncharacterized protein; Found in the gene: LotjaGi2g1v0134300	Domains IPR006706 NON_CYTOPLASMIC_DOMAIN PF04554 PR01217 PTHR36586 PTHR36586:SF9 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SignalP-TM SignalP-noTM mobidb-lite	13
LotjaGi2g1v0134300.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Extensin 3; TAIR: AT1G21310.1 extensin 3; Swiss-Prot: sp\|Q9FS16\|EXTN3_ARATH Extensin-3; TrEMBL-Plants: tr\|A0A176WBI8\|A0A176WBI8_MARPO Uncharacterized protein; Found in the gene: LotjaGi2g1v0134300	Domains IPR006706 NON_CYTOPLASMIC_DOMAIN PF04554 PTHR36586 PTHR36586:SF9 SIGNAL_PEPTIDE SIGNAL_PEPTIDE_C_REGION SIGNAL_PEPTIDE_H_REGION SIGNAL_PEPTIDE_N_REGION SignalP-TM SignalP-noTM mobidb-lite	12

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	12.50