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Lj0g3v0250279.1

Overview

Field	Value
Gene ID	Lj0g3v0250279
Transcript ID	Lj0g3v0250279.1
Lotus japonicus genome version	MG20 v3.0
Description	RING/U-box superfamily protein isoform 2 [Theobroma cacao] gi\|508785653\|gb\|EOY32909.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
Gene3D	G3DSA:3.30.40.10 View details on G3DSA:3.30.40.10 Search for proteins/transripts with this domain View external data on G3DSA:3.30.40.10	48	96	49	2.30E-12	IPR013083 Show description in modal box View details on IPR013083 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF57850 View details on SSF57850 Search for proteins/transripts with this domain View external data on SSF57850	49	99	51	2.55E-15	–
CDD	cd00162 View details on cd00162 Search for proteins/transripts with this domain View external data on cd00162	50	96	47	4.96E-08	–
SMART	SM00184 View details on SM00184 Search for proteins/transripts with this domain View external data on SM00184	50	92	43	3.80E-06	IPR001841 Show description in modal box View details on IPR001841 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF13639 View details on PF13639 Search for proteins/transripts with this domain View external data on PF13639	50	93	44	3.30E-09	IPR001841 Show description in modal box View details on IPR001841 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS50089 View details on PS50089 Search for proteins/transripts with this domain View external data on PS50089	50	93	44	12.563	IPR001841 Show description in modal box View details on IPR001841 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSitePatterns	PS00518 View details on PS00518 Search for proteins/transripts with this domain View external data on PS00518	68	77	10	–	IPR017907 Show description in modal box View details on IPR017907 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	189	258	70	–	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 10

Expression data

Expression pattern

Expression pattern of Lj0g3v0250279.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0250279.1, powered by CORGI.

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