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Lj0g3v0251169.1

Overview

Field Value
Gene ID Lj0g3v0251169
Transcript ID Lj0g3v0251169.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: homeobox-leucine zipper protein ROC6-like [Cicer arietinum] gi|502175726|ref|XP_004515730.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 58 58 – –
PANTHER
PTHR24326
11 126 116 2.10E-194 –
PANTHER
PTHR24326:SF288
11 126 116 2.10E-194 –
Gene3D
G3DSA:1.10.10.60
36 107 72 1.40E-21
IPR009057
SUPERFAMILY
SSF46689
37 107 71 9.19E-20
IPR009057
ProSiteProfiles
PS50071
47 107 61 17.54
IPR001356
SMART
SM00389
49 111 63 9.80E-19
IPR001356
Pfam
PF00046
50 105 56 3.30E-19
IPR001356
CDD
cd00086
54 107 54 1.34E-16 –
ProSitePatterns
PS00027
82 105 24 –
IPR017970
Coils
Coil
101 136 36 – –
PANTHER
PTHR24326
155 168 14 2.10E-194 –
PANTHER
PTHR24326:SF288
155 168 14 2.10E-194 –
ProSiteProfiles
PS50848
251 469 219 37.958
IPR002913
CDD
cd08875
256 465 210 1.79E-82 –
SUPERFAMILY
SSF55961
256 466 211 1.41E-25 –
SMART
SM00234
260 466 207 1.80E-29
IPR002913
Pfam
PF01852
261 466 206 4.00E-45
IPR002913
PANTHER
PTHR24326
442 725 284 2.10E-194 –
PANTHER
PTHR24326:SF288
442 725 284 2.10E-194 –
SUPERFAMILY
SSF55961
490 719 230 2.02E-16 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0008289
Molecular function Lipid binding Interacting selectively and non-covalently with a lipid.
Subterm of
GO:0043565
Molecular function Sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
Subterm of

Genome browser

LORE1 insertions 20

Expression data

Expression pattern

Expression pattern of Lj0g3v0251169.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0251169.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.