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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0252279 |
| Transcript ID | Lj0g3v0252279.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At5g39710-like isoform X1 [Cicer arietinum] gi|502123558|ref|XP_004498166.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 383 | 383 | – | – | |
| ProSiteProfiles | 1 | 33 | 33 | 6.939 | ||
| PANTHER | 15 | 48 | 34 | 8.60E-86 | – | |
| PANTHER | 15 | 48 | 34 | 8.60E-86 | – | |
| Coils | 38 | 41 | 4 | – | – | |
| Coils | 68 | 68 | 1 | – | – | |
| PANTHER | 69 | 317 | 249 | 8.60E-86 | – | |
| PANTHER | 69 | 317 | 249 | 8.60E-86 | – | |
| Pfam | 72 | 119 | 48 | 4.60E-14 | ||
| ProSiteProfiles | 73 | 107 | 35 | 12.003 | ||
| TIGRFAM | 77 | 109 | 33 | 2.90E-07 | ||
| Gene3D | 77 | 191 | 115 | 4.30E-05 | ||
| ProSiteProfiles | 108 | 142 | 35 | 9.427 | ||
| TIGRFAM | 110 | 139 | 30 | 0.0015 | ||
| ProSiteProfiles | 150 | 184 | 35 | 11.794 | ||
| Pfam | 151 | 194 | 44 | 3.40E-12 | ||
| TIGRFAM | 152 | 186 | 35 | 2.50E-07 | ||
| ProSiteProfiles | 185 | 219 | 35 | 7.695 | ||
| ProSiteProfiles | 234 | 268 | 35 | 8.857 | ||
| Pfam | 237 | 265 | 29 | 0.029 | ||
| ProSiteProfiles | 269 | 303 | 35 | 5.514 | ||
| ProSiteProfiles | 321 | 355 | 35 | 5.7 | ||
| PANTHER | 333 | 467 | 135 | 8.60E-86 | – | |
| PANTHER | 333 | 467 | 135 | 8.60E-86 | – | |
| ProSiteProfiles | 356 | 390 | 35 | 9.482 | ||
| Pfam | 359 | 388 | 30 | 0.0025 | ||
| TIGRFAM | 359 | 388 | 30 | 0.0013 | ||
| Phobius | 384 | 403 | 20 | – | – | |
| Phobius | 404 | 468 | 65 | – | – | |
| Phobius | 469 | 485 | 17 | – | – | |
| Phobius | 486 | 491 | 6 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj0g3v0252279.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0252279.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.