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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0254439 |
| Transcript ID | Lj0g3v0254439.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Pumilio-like protein [Medicago truncatula] gi|357454231|ref|XP_003597396.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 441 | 441 | 0 | – | |
| PANTHER | 1 | 441 | 441 | 0 | – | |
| Pfam | 1 | 123 | 123 | 1.70E-64 | ||
| ProSiteProfiles | 104 | 444 | 341 | 131.372 | ||
| Gene3D | 106 | 444 | 339 | 1.20E-138 | ||
| SUPERFAMILY | 107 | 439 | 333 | 4.37E-120 | ||
| CDD | 120 | 439 | 320 | 9.68E-169 | ||
| SMART | 124 | 159 | 36 | 2.40E-05 | ||
| ProSiteProfiles | 124 | 159 | 36 | 11.3 | ||
| Pfam | 124 | 154 | 31 | 5.40E-07 | ||
| ProSiteProfiles | 160 | 195 | 36 | 10.46 | ||
| SMART | 160 | 195 | 36 | 2.10E-06 | ||
| Pfam | 163 | 191 | 29 | 1.20E-06 | ||
| SMART | 196 | 231 | 36 | 4.50E-07 | ||
| ProSiteProfiles | 196 | 231 | 36 | 10.577 | ||
| Pfam | 197 | 226 | 30 | 7.20E-06 | ||
| ProSiteProfiles | 232 | 267 | 36 | 9.924 | ||
| SMART | 232 | 267 | 36 | 4.50E-07 | ||
| Pfam | 236 | 265 | 30 | 2.70E-06 | ||
| SMART | 268 | 304 | 37 | 3.20E-07 | ||
| ProSiteProfiles | 268 | 304 | 37 | 10.88 | ||
| Pfam | 269 | 300 | 32 | 2.00E-09 | ||
| SMART | 305 | 340 | 36 | 1.80E-06 | ||
| ProSiteProfiles | 305 | 340 | 36 | 12.117 | ||
| Pfam | 308 | 336 | 29 | 7.80E-07 | ||
| SMART | 341 | 376 | 36 | 8.60E-08 | ||
| ProSiteProfiles | 341 | 376 | 36 | 9.69 | ||
| Pfam | 342 | 374 | 33 | 8.00E-06 | ||
| ProSiteProfiles | 377 | 418 | 42 | 10.017 | ||
| SMART | 383 | 418 | 36 | 8.70E-07 | ||
| Pfam | 391 | 417 | 27 | 8.10E-07 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of Lj0g3v0254439.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0254439.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.