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Lj0g3v0256559.1

Overview

Field	Value
Gene ID	Lj0g3v0256559
Transcript ID	Lj0g3v0256559.1
Lotus japonicus genome version	MG20 v3.0
Description	Os06g0181300 [Oryza sativa Japonica Group] gi\|115466758\|ref\|NP_001056978.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	213	238	26	–	–
PANTHER	PTHR21717 View details on PTHR21717 Search for proteins/transripts with this domain View external data on PTHR21717	254	330	77	1.10E-24	–
PANTHER	PTHR21717:SF22 View details on PTHR21717:SF22 Search for proteins/transripts with this domain View external data on PTHR21717:SF22	254	330	77	1.10E-24	–
Gene3D	G3DSA:1.10.10.60 View details on G3DSA:1.10.10.60 Search for proteins/transripts with this domain View external data on G3DSA:1.10.10.60	273	330	58	2.00E-11	IPR009057 Show description in modal box View details on IPR009057 Search for proteins/transripts with this domain View on EBI InterPro Service
ProSiteProfiles	PS51294 View details on PS51294 Search for proteins/transripts with this domain View external data on PS51294	276	336	61	10.045	IPR017930 Show description in modal box View details on IPR017930 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF46689 View details on SSF46689 Search for proteins/transripts with this domain View external data on SSF46689	278	331	54	2.96E-13	IPR009057 Show description in modal box View details on IPR009057 Search for proteins/transripts with this domain View on EBI InterPro Service
CDD	cd11660 View details on cd11660 Search for proteins/transripts with this domain View external data on cd11660	282	331	50	3.18E-17	–
Pfam	PF00249 View details on PF00249 Search for proteins/transripts with this domain View external data on PF00249	282	330	49	6.70E-06	IPR001005 Show description in modal box View details on IPR001005 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0003677 View details of GO:0003677 AmiGO InterPro QuickGO	Molecular function	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).	Subterm of View details of GO:0003676

Genome browser

LORE1 insertions 25

Expression data

Expression pattern

Expression pattern of Lj0g3v0256559.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0256559.1, powered by CORGI.

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