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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0257529 |
| Transcript ID | Lj0g3v0257529.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At5g55740, chloroplastic-like [Cicer arietinum] gi|502149679|ref|XP_004507624.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 55 | 89 | 35 | 5.481 | ||
| PANTHER | 75 | 279 | 205 | 0 | – | |
| PANTHER | 75 | 279 | 205 | 0 | – | |
| ProSiteProfiles | 92 | 122 | 31 | 6.292 | ||
| ProSiteProfiles | 123 | 157 | 35 | 9.909 | ||
| ProSiteProfiles | 194 | 224 | 31 | 8.144 | ||
| TIGRFAM | 199 | 227 | 29 | 2.40E-04 | ||
| Gene3D | 201 | 278 | 78 | 9.10E-10 | ||
| Pfam | 224 | 273 | 50 | 3.10E-12 | ||
| ProSiteProfiles | 225 | 259 | 35 | 11.268 | ||
| TIGRFAM | 227 | 261 | 35 | 2.10E-06 | ||
| ProSiteProfiles | 296 | 326 | 31 | 5.678 | ||
| Pfam | 302 | 326 | 25 | 1.1 | ||
| SUPERFAMILY | 305 | 336 | 32 | 8.13E-05 | ||
| ProSiteProfiles | 327 | 361 | 35 | 10.611 | ||
| TIGRFAM | 329 | 361 | 33 | 6.10E-06 | ||
| Pfam | 329 | 358 | 30 | 6.30E-06 | ||
| Gene3D | 330 | 357 | 28 | 9.10E-10 | ||
| PANTHER | 381 | 777 | 397 | 0 | – | |
| PANTHER | 381 | 777 | 397 | 0 | – | |
| Gene3D | 394 | 490 | 97 | 9.10E-10 | ||
| ProSiteProfiles | 397 | 427 | 31 | 7.443 | ||
| SUPERFAMILY | 404 | 435 | 32 | 8.13E-05 | ||
| ProSiteProfiles | 428 | 462 | 35 | 9.887 | ||
| Pfam | 430 | 456 | 27 | 1.10E-04 | ||
| TIGRFAM | 430 | 457 | 28 | 2.90E-04 | ||
| Pfam | 463 | 511 | 49 | 2.00E-14 | ||
| ProSiteProfiles | 463 | 497 | 35 | 12.847 | ||
| TIGRFAM | 465 | 498 | 34 | 1.10E-08 | ||
| ProSiteProfiles | 498 | 532 | 35 | 11.729 | ||
| TIGRFAM | 500 | 533 | 34 | 1.10E-07 | ||
| ProSiteProfiles | 568 | 598 | 31 | 5.393 | ||
| Gene3D | 599 | 629 | 31 | 2.90E-05 | ||
| ProSiteProfiles | 599 | 633 | 35 | 10.643 | ||
| TIGRFAM | 602 | 634 | 33 | 4.80E-06 | ||
| Pfam | 602 | 646 | 45 | 2.10E-08 | ||
| ProSiteProfiles | 634 | 669 | 36 | 8.002 | ||
| TIGRFAM | 637 | 662 | 26 | 0.0032 | ||
| ProSiteProfiles | 670 | 700 | 31 | 6.182 | ||
| SUPERFAMILY | 678 | 756 | 79 | 8.13E-05 | ||
| Gene3D | 699 | 755 | 57 | 2.90E-05 | ||
| ProSiteProfiles | 702 | 732 | 31 | 5.316 | ||
| ProSiteProfiles | 736 | 770 | 35 | 8.111 | ||
| Pfam | 740 | 768 | 29 | 1.2 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj0g3v0257529.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0257529.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.