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Lj0g3v0257789.1

Overview

Field Value
Gene ID Lj0g3v0257789
Transcript ID Lj0g3v0257789.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: tubulin gamma-1 chain-like isoform X1 [Cicer arietinum] gi|502113903|ref|XP_004494797.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SUPERFAMILY
SSF52490
1 128 128 7.46E-43
IPR003008
Pfam
PF00091
1 96 96 7.80E-32
IPR003008
PANTHER
PTHR11588:SF7
1 345 345 1.90E-217
IPR002454
PANTHER
PTHR11588
1 345 345 1.90E-217
IPR000217
CDD
cd02188
1 320 320 0
IPR002454
Gene3D
G3DSA:3.40.50.1440
1 148 148 2.00E-59
IPR003008
SMART
SM00864
2 129 128 1.00E-07
IPR003008
PRINTS
PR01161
16 34 19 7.00E-32
IPR000217
ProSitePatterns
PS00227
24 30 7 –
IPR017975
PRINTS
PR01161
35 56 22 7.00E-32
IPR000217
PRINTS
PR01161
61 74 14 7.00E-32
IPR000217
PRINTS
PR01161
75 95 21 7.00E-32
IPR000217
PRINTS
PR01164
75 88 14 1.10E-63
IPR002454
SUPERFAMILY
SSF55307
129 328 200 4.58E-62
IPR008280
SMART
SM00865
131 277 147 4.40E-27
IPR018316
PRINTS
PR01164
133 144 12 1.10E-63
IPR002454
Pfam
PF03953
146 275 130 2.60E-45
IPR018316
Gene3D
G3DSA:3.30.1330.20
149 267 119 9.00E-42
IPR018316
PRINTS
PR01164
168 183 16 1.10E-63
IPR002454
PRINTS
PR01164
223 246 24 1.10E-63
IPR002454
PRINTS
PR01164
248 268 21 1.10E-63
IPR002454
PRINTS
PR01161
264 292 29 7.00E-32
IPR000217
Gene3D
G3DSA:1.10.287.600
268 323 56 5.10E-09
IPR023123
PRINTS
PR01164
305 328 24 1.10E-63
IPR002454

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000930
Cellular component Gamma-tubulin complex A multiprotein complex composed of gamma-tubulin and other non-tubulin proteins. Gamma-tubulin complexes are localized to microtubule organizing centers, and play an important role in the nucleation of microtubules. The number and complexity of non-tubulin proteins associated with these complexes varies between species.
Subterm of
GO:0003924
Molecular function GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
Subterm of
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of
GO:0005874
Cellular component Microtubule Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle.
Subterm of
Part of
GO:0007017
Biological process Microtubule-based process Any cellular process that depends upon or alters the microtubule cytoskeleton, that part of the cytoskeleton comprising microtubules and their associated proteins.
Subterm of
GO:0007020
Biological process Microtubule nucleation The process in which tubulin alpha-beta heterodimers begin aggregation to form an oligomeric tubulin structure (a microtubule seed). Microtubule nucleation is the initiating step in the formation of a microtubule in the absence of any existing microtubules ('de novo' microtubule formation).
Subterm of
Part of
GO:0031122
Biological process Cytoplasmic microtubule organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of structures formed of microtubules and associated proteins in the cytoplasm of a cell.
Subterm of

Genome browser

LORE1 insertions 16

Expression data

Expression pattern

Expression pattern of Lj0g3v0257789.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0257789.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.