Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

IPR023123

Description

IPR023123 is a Tubulin, C-terminal.

<p>Microtubules are polymers of tubulin, a dimer of two 55kDa subunits, designated alpha and beta [[cite:PUB00000039], [cite:PUB00000978]]. Within the microtubule lattice, α-β heterodimers associate in a head-to-tail fashion, giving rise to microtubule polarity. Fluorescent labelling studies have suggested that tubulin is oriented in microtubules with beta-tubulin toward the plus end [[cite:PUB00006112]].</p> <p>For maximal rate and extent of polymerisation into microtubules, tubulin requires GTP. Two molecules of GTP are bound at different sites, termed N and E. At the E (Exchangeable) site, GTP is hydrolysed during incorporation into the microtubule. Close to the E site is an invariant region rich in glycine residues, which is found in both chains and is thought to control access of the nucleotide to its binding site [[cite:PUB00002443]].</p> <p>Most species, excepting simple eukaryotes, express a variety of closely-related alpha- and beta-isotypes. A third family member, gamma tubulin, has also been identified in a number of species. Gamma tubulin is found at microtubule-organising centres, such as the spindle poles or the centrosome, suggesting that it is involved in minus-end nucleation of microtubule assembly [[cite:PUB00000721]]. Further eukaryotic tubulins (gamma, epsilon, zeta) that are restricted to certain lineages or species have been reported [[cite:PUB00072959], [cite:PUB00099927]].</p> <p>Bacterial and archaeal homologues of tubulin have been discovered. BtubA and BtubB, two bacterial homologues in the genus Prosthecobacter, have probably been derived by horizontal gene transfer [[cite:PUB00072957], [cite:PUB00039756]].</p> <p>This entry represents the extreme C-terminal structural domain of both alpha and beta tubulin. It forms a helix hairpin [[cite:PUB00020380]].</p>

This description is obtained from EB-eye REST.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 52

Transcript Name Description Predicted domains Domain count
Tubulin gamma-1 chain [Arabidopsis thaliana] gi|15233174|ref|NP_191724.1| 8
PREDICTED: tubulin beta-2 chain-like [Glycine max] gi|356504309|ref|XP_003520939.1| 26
PREDICTED: tubulin gamma-1 chain-like isoform X1 [Cicer arietinum] gi|502113903|ref|XP_004494797.1| 22
Tubulin alpha-7 chain [Medicago truncatula] gi|357466771|ref|XP_003603670.1| 24
PREDICTED: tubulin gamma-1 chain-like isoform X1 [Cicer arietinum] gi|502113903|ref|XP_004494797.1| 15
PREDICTED: tubulin alpha-1 chain [Vitis vinifera] gi|225435758|ref|XP_002285721.1| 23
Alpha-tubulin, partial [Populus alba] gi|403329628|gb|AFR42124.1| 13
PREDICTED: tubulin beta-1 chain-like [Glycine max] gi|356571899|ref|XP_003554108.1| 26
Beta-tubulin 16 [Salix arbutifolia] gi|460240332|gb|AGH08237.1| 26
RecName: Full=Tubulin beta-2 chain; AltName: Full=Beta-2-tubulingi|4415992|gb|AAD20179.1| beta-tubulin 2 [Eleusine indica] gi|8928425|sp|Q9ZPN9.1|TBB2_ELEIN 17
PREDICTED: tubulin beta-3 chain-like [Cicer arietinum] gi|502141952|ref|XP_004504719.1| 18
14
RecName: Full=Tubulin alpha-3 chain; AltName: Full=Alpha-3-tubulingi|2511535|gb|AAC05719.1| alpha-tubulin 3 [Eleusine indica] gi|6094431|sp|O22349.1|TBA3_ELEIN 25
PREDICTED: tubulin beta-1 chain-like [Cicer arietinum] gi|502139309|ref|XP_004503723.1| 23
PREDICTED: tubulin beta-1 chain-like [Cicer arietinum] gi|502139309|ref|XP_004503723.1| 25
PREDICTED: tubulin beta-1 chain-like [Cicer arietinum] gi|502119269|ref|XP_004496560.1| 26
PREDICTED: tubulin alpha chain-like [Cicer arietinum] gi|502120143|ref|XP_004496862.1| 23
Tubulin beta chain [Lotus japonicus] gi|244539475|dbj|BAH82659.1| 26
Tubulin beta chain; TAIR: AT3G61650.1 gamma-tubulin; Swiss-Prot: sp|P38557|TBG1_ARATH Tubulin gamma-1 chain; TrEMBL-Plants: tr|G7L416|G7L416_MEDTR Tubulin gamma chain; Found in the gene: LotjaGi1g1v0042300 24
Tubulin beta chain; TAIR: AT3G61650.1 gamma-tubulin; Swiss-Prot: sp|P38557|TBG1_ARATH Tubulin gamma-1 chain; TrEMBL-Plants: tr|G7L416|G7L416_MEDTR Tubulin gamma chain; Found in the gene: LotjaGi1g1v0042300 24
Tubulin alpha chain; TAIR: AT1G04820.1 tubulin alpha-4 chain; Swiss-Prot: sp|P46259|TBA1_PEA Tubulin alpha-1 chain; TrEMBL-Plants: tr|A0A0L9UGJ9|A0A0L9UGJ9_PHAAN Tubulin alpha chain; Found in the gene: LotjaGi1g1v0412500 26
Tubulin beta chain; TAIR: AT3G61650.1 gamma-tubulin; Swiss-Prot: sp|P38557|TBG1_ARATH Tubulin gamma-1 chain; TrEMBL-Plants: tr|G7L416|G7L416_MEDTR Tubulin gamma chain; Found in the gene: LotjaGi1g1v0545200 24
Tubulin beta chain; TAIR: AT3G61650.1 gamma-tubulin; Swiss-Prot: sp|P38557|TBG1_ARATH Tubulin gamma-1 chain; TrEMBL-Plants: tr|G7L416|G7L416_MEDTR Tubulin gamma chain; Found in the gene: LotjaGi1g1v0545200 24
Tubulin alpha chain; TAIR: AT5G19770.1 tubulin alpha-3; Swiss-Prot: sp|O22349|TBA3_ELEIN Tubulin alpha-3 chain; TrEMBL-Plants: tr|I1ML11|I1ML11_SOYBN Tubulin alpha chain; Found in the gene: LotjaGi1g1v0643600 25
Tubulin alpha chain; TAIR: AT5G19770.1 tubulin alpha-3; Swiss-Prot: sp|O22349|TBA3_ELEIN Tubulin alpha-3 chain; TrEMBL-Plants: tr|I1ML11|I1ML11_SOYBN Tubulin alpha chain; Found in the gene: LotjaGi1g1v0643600 25
Tubulin beta chain; TAIR: AT5G12250.1 beta-6 tubulin; Swiss-Prot: sp|P29514|TBB6_ARATH Tubulin beta-6 chain; TrEMBL-Plants: tr|G7L5V0|G7L5V0_MEDTR Tubulin beta chain; Found in the gene: LotjaGi1g1v0659300 28
Tubulin beta chain; TAIR: AT5G12250.1 beta-6 tubulin; Swiss-Prot: sp|P29514|TBB6_ARATH Tubulin beta-6 chain; TrEMBL-Plants: tr|G7L5V0|G7L5V0_MEDTR Tubulin beta chain; Found in the gene: LotjaGi1g1v0659300 28
Tubulin beta chain; TAIR: AT5G12250.1 beta-6 tubulin; Swiss-Prot: sp|P29514|TBB6_ARATH Tubulin beta-6 chain; TrEMBL-Plants: tr|G7L5V0|G7L5V0_MEDTR Tubulin beta chain; Found in the gene: LotjaGi1g1v0659300 28
Tubulin alpha chain; TAIR: AT5G19770.1 tubulin alpha-3; Swiss-Prot: sp|P28752|TBA1_ORYSJ Tubulin alpha-1 chain; TrEMBL-Plants: tr|A0A0L9VLH4|A0A0L9VLH4_PHAAN Tubulin alpha chain; Found in the gene: LotjaGi2g1v0107000 26
Tubulin beta chain; TAIR: AT5G62690.1 tubulin beta chain 2; Swiss-Prot: sp|P12460|TBB2_SOYBN Tubulin beta-2 chain; TrEMBL-Plants: tr|I1JLU8|I1JLU8_SOYBN Tubulin beta chain; Found in the gene: LotjaGi3g1v0217800 28
Tubulin beta chain; TAIR: AT5G62690.1 tubulin beta chain 2; Swiss-Prot: sp|P12460|TBB2_SOYBN Tubulin beta-2 chain; TrEMBL-Plants: tr|I1JLU8|I1JLU8_SOYBN Tubulin beta chain; Found in the gene: LotjaGi3g1v0217800 28
Tubulin beta chain; TAIR: AT5G23860.1 tubulin beta 8; Swiss-Prot: sp|P12460|TBB2_SOYBN Tubulin beta-2 chain; TrEMBL-Plants: tr|I1JLU8|I1JLU8_SOYBN Tubulin beta chain; Found in the gene: LotjaGi3g1v0217800 28
Tubulin beta chain; TAIR: AT2G29550.1 tubulin beta-7 chain; Swiss-Prot: sp|Q9ZPP0|TBB1_ELEIN Tubulin beta-1 chain; TrEMBL-Plants: tr|A0A067GIJ4|A0A067GIJ4_CITSI Tubulin beta chain; Found in the gene: LotjaGi4g1v0026900 28
Tubulin beta chain; TAIR: AT2G29550.1 tubulin beta-7 chain; Swiss-Prot: sp|Q9ZPP0|TBB1_ELEIN Tubulin beta-1 chain; TrEMBL-Plants: tr|A0A067GIJ4|A0A067GIJ4_CITSI Tubulin beta chain; Found in the gene: LotjaGi4g1v0026900 28
Tubulin beta chain; TAIR: AT2G29550.1 tubulin beta-7 chain; Swiss-Prot: sp|Q9ZPP0|TBB1_ELEIN Tubulin beta-1 chain; TrEMBL-Plants: tr|A0A067GIJ4|A0A067GIJ4_CITSI Tubulin beta chain; Found in the gene: LotjaGi4g1v0026900 28
Tubulin beta chain; TAIR: AT2G29550.1 tubulin beta-7 chain; Swiss-Prot: sp|Q9ZPP0|TBB1_ELEIN Tubulin beta-1 chain; TrEMBL-Plants: tr|A0A067GIJ4|A0A067GIJ4_CITSI Tubulin beta chain; Found in the gene: LotjaGi4g1v0026900 28
Tubulin beta chain; TAIR: AT2G29550.1 tubulin beta-7 chain; Swiss-Prot: sp|Q9ZPP0|TBB1_ELEIN Tubulin beta-1 chain; TrEMBL-Plants: tr|A0A067GIJ4|A0A067GIJ4_CITSI Tubulin beta chain; Found in the gene: LotjaGi4g1v0026900 28
Tubulin alpha chain; TAIR: AT5G19770.1 tubulin alpha-3; Swiss-Prot: sp|Q56WH1|TBA3_ARATH Tubulin alpha-3 chain; TrEMBL-Plants: tr|A0A151TKV5|A0A151TKV5_CAJCA Tubulin alpha chain; Found in the gene: LotjaGi4g1v0376700 27
Tubulin alpha chain; TAIR: AT5G19770.1 tubulin alpha-3; Swiss-Prot: sp|Q56WH1|TBA3_ARATH Tubulin alpha-3 chain; TrEMBL-Plants: tr|A0A151TKV5|A0A151TKV5_CAJCA Tubulin alpha chain; Found in the gene: LotjaGi4g1v0376700 27
Tubulin alpha chain; TAIR: AT5G19770.1 tubulin alpha-3; Swiss-Prot: sp|Q56WH1|TBA3_ARATH Tubulin alpha-3 chain; TrEMBL-Plants: tr|A0A151TKV5|A0A151TKV5_CAJCA Tubulin alpha chain; Found in the gene: LotjaGi4g1v0376700 27
Tubulin beta chain; TAIR: AT5G12250.1 beta-6 tubulin; Swiss-Prot: sp|P12459|TBB1_SOYBN Tubulin beta-1 chain; TrEMBL-Plants: tr|A0A1J7HE29|A0A1J7HE29_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0425600 27
Tubulin beta chain; TAIR: AT5G12250.1 beta-6 tubulin; Swiss-Prot: sp|P12459|TBB1_SOYBN Tubulin beta-1 chain; TrEMBL-Plants: tr|A0A1J7HE29|A0A1J7HE29_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0425600 27
Tubulin beta chain; TAIR: AT5G12250.1 beta-6 tubulin; Swiss-Prot: sp|P12459|TBB1_SOYBN Tubulin beta-1 chain; TrEMBL-Plants: tr|A0A1J7HE29|A0A1J7HE29_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0425600 27
Tubulin beta chain; TAIR: AT5G12250.1 beta-6 tubulin; Swiss-Prot: sp|P18025|TBB1_MAIZE Tubulin beta-1 chain; TrEMBL-Plants: tr|A0A151TK69|A0A151TK69_CAJCA Tubulin beta chain; Found in the gene: LotjaGi4g1v0464300 28
Tubulin beta chain; TAIR: AT5G12250.1 beta-6 tubulin; Swiss-Prot: sp|P18025|TBB1_MAIZE Tubulin beta-1 chain; TrEMBL-Plants: tr|A0A151TK69|A0A151TK69_CAJCA Tubulin beta chain; Found in the gene: LotjaGi4g1v0464300 28
Tubulin beta chain; TAIR: AT1G20010.1 tubulin beta-5 chain; Swiss-Prot: sp|P18025|TBB1_MAIZE Tubulin beta-1 chain; TrEMBL-Plants: tr|A0A0S3RAJ6|A0A0S3RAJ6_PHAAN Tubulin beta chain; Found in the gene: LotjaGi5g1v0005400 28
Tubulin beta chain; TAIR: AT5G23860.1 tubulin beta 8; Swiss-Prot: sp|P37392|TBB1_LUPAL Tubulin beta-1 chain; TrEMBL-Plants: tr|A0A058ZXC7|A0A058ZXC7_EUCGR Tubulin beta chain; Found in the gene: LotjaGi5g1v0300100 28
Tubulin beta chain; TAIR: AT5G23860.1 tubulin beta 8; Swiss-Prot: sp|P37392|TBB1_LUPAL Tubulin beta-1 chain; TrEMBL-Plants: tr|A0A058ZXC7|A0A058ZXC7_EUCGR Tubulin beta chain; Found in the gene: LotjaGi5g1v0300100 28
Tubulin beta chain; TAIR: AT5G23860.1 tubulin beta 8; Swiss-Prot: sp|Q40106|TBB2_LUPAL Tubulin beta-2 chain; TrEMBL-Plants: tr|M5WZG9|M5WZG9_PRUPE Tubulin beta chain; Found in the gene: LotjaGi5g1v0300100 24
Tubulin alpha chain; TAIR: AT1G04820.1 tubulin alpha-4 chain; Swiss-Prot: sp|Q6VAF9|TBA4_GOSHI Tubulin alpha-4 chain; TrEMBL-Plants: tr|A0A1J7FT38|A0A1J7FT38_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0319800 25
Tubulin beta chain; TAIR: AT5G23860.1 tubulin beta 8; Swiss-Prot: sp|Q40665|TBB3_ORYSJ Tubulin beta-3 chain; TrEMBL-Plants: tr|C5NU06|C5NU06_LOTJA Tubulin beta chain; Found in the gene: LotjaGi6g1v0268300 28
Tubulin beta chain; TAIR: AT5G23860.1 tubulin beta 8; Swiss-Prot: sp|Q40665|TBB3_ORYSJ Tubulin beta-3 chain; TrEMBL-Plants: tr|C5NU06|C5NU06_LOTJA Tubulin beta chain; Found in the gene: LotjaGi6g1v0268300 28

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 1.92