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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0257829 |
| Transcript ID | Lj0g3v0257829.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At5g39710-like [Glycine max] gi|356577033|ref|XP_003556634.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 360 | 360 | 3.50E-94 | – | |
| Phobius | 1 | 334 | 334 | – | – | |
| PANTHER | 1 | 360 | 360 | 3.50E-94 | – | |
| ProSiteProfiles | 5 | 46 | 42 | 5.875 | ||
| Pfam | 9 | 124 | 116 | 1.70E-12 | ||
| ProSiteProfiles | 47 | 81 | 35 | 11.772 | ||
| TIGRFAM | 50 | 81 | 32 | 3.00E-06 | ||
| ProSiteProfiles | 82 | 116 | 35 | 9.865 | ||
| TIGRFAM | 85 | 118 | 34 | 2.20E-06 | ||
| ProSiteProfiles | 117 | 151 | 35 | 11.411 | ||
| TIGRFAM | 120 | 151 | 32 | 1.00E-05 | ||
| ProSiteProfiles | 152 | 186 | 35 | 9.624 | ||
| TIGRFAM | 155 | 186 | 32 | 0.0021 | ||
| Pfam | 155 | 184 | 30 | 0.079 | ||
| Pfam | 194 | 241 | 48 | 1.40E-10 | ||
| ProSiteProfiles | 195 | 229 | 35 | 10.698 | ||
| TIGRFAM | 197 | 224 | 28 | 0.0011 | ||
| ProSiteProfiles | 230 | 260 | 31 | 8.155 | ||
| ProSiteProfiles | 280 | 310 | 31 | 5.7 | ||
| Phobius | 335 | 353 | 19 | – | – | |
| TMHMM | 335 | 357 | 23 | – | – | |
| Phobius | 354 | 425 | 72 | – | – | |
| ProSiteProfiles | 364 | 398 | 35 | 6.369 | ||
| PANTHER | 376 | 510 | 135 | 3.50E-94 | – | |
| PANTHER | 376 | 510 | 135 | 3.50E-94 | – | |
| ProSiteProfiles | 399 | 433 | 35 | 8.32 | ||
| TIGRFAM | 402 | 432 | 31 | 0.0019 | ||
| Pfam | 402 | 431 | 30 | 0.0023 | ||
| TMHMM | 425 | 447 | 23 | – | – | |
| Phobius | 426 | 446 | 21 | – | – | |
| Phobius | 447 | 541 | 95 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of Lj0g3v0257829.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0257829.1, powered by CORGI.
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