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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0258499 |
| Transcript ID | Lj0g3v0258499.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At3g29290-like isoform X1 [Cicer arietinum] gi|502102084|ref|XP_004491962.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 83 | 136 | 54 | – | – | |
| MobiDBLite | 208 | 230 | 23 | – | – | |
| PANTHER | 268 | 695 | 428 | 1.20E-152 | – | |
| PANTHER | 268 | 695 | 428 | 1.20E-152 | – | |
| ProSiteProfiles | 274 | 308 | 35 | 7.092 | ||
| ProSiteProfiles | 309 | 343 | 35 | 8.561 | ||
| TIGRFAM | 312 | 341 | 30 | 0.003 | ||
| Pfam | 313 | 341 | 29 | 0.0034 | ||
| ProSiteProfiles | 381 | 415 | 35 | 9.46 | ||
| TIGRFAM | 383 | 413 | 31 | 1.40E-05 | ||
| Pfam | 384 | 413 | 30 | 4.30E-04 | ||
| ProSiteProfiles | 416 | 450 | 35 | 9.569 | ||
| Gene3D | 417 | 686 | 270 | 9.90E-13 | ||
| TIGRFAM | 419 | 452 | 34 | 1.30E-05 | ||
| Pfam | 419 | 448 | 30 | 0.34 | ||
| SUPERFAMILY | 420 | 583 | 164 | 2.88E-05 | – | |
| ProSiteProfiles | 451 | 485 | 35 | 10.49 | ||
| TIGRFAM | 455 | 486 | 32 | 1.90E-06 | ||
| Pfam | 456 | 480 | 25 | 3.20E-04 | ||
| Pfam | 485 | 532 | 48 | 2.40E-12 | ||
| ProSiteProfiles | 486 | 520 | 35 | 11.224 | ||
| TIGRFAM | 488 | 522 | 35 | 1.50E-07 | ||
| ProSiteProfiles | 521 | 551 | 31 | 9.821 | ||
| TIGRFAM | 523 | 551 | 29 | 9.90E-05 | ||
| ProSiteProfiles | 557 | 591 | 35 | 9.668 | ||
| Pfam | 560 | 588 | 29 | 5.70E-04 | ||
| ProSiteProfiles | 592 | 626 | 35 | 8.791 | ||
| Pfam | 594 | 638 | 45 | 1.40E-04 | ||
| TIGRFAM | 594 | 627 | 34 | 7.10E-05 | ||
| ProSiteProfiles | 657 | 691 | 35 | 11.005 | ||
| TIGRFAM | 660 | 693 | 34 | 4.00E-05 | ||
| Pfam | 660 | 689 | 30 | 0.019 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj0g3v0258499.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0258499.1, powered by CORGI.
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