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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0259639 |
| Transcript ID | Lj0g3v0259639.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Cicer arietinum] gi|502140200|ref|XP_004504105.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 19 | 19 | – | – | |
| PANTHER | 31 | 453 | 423 | 4.90E-238 | – | |
| PANTHER | 31 | 453 | 423 | 4.90E-238 | – | |
| ProSiteProfiles | 36 | 66 | 31 | 7.169 | ||
| Pfam | 44 | 67 | 24 | 0.25 | ||
| Gene3D | 67 | 146 | 80 | 7.00E-07 | ||
| ProSiteProfiles | 67 | 101 | 35 | 9.701 | ||
| Pfam | 69 | 98 | 30 | 3.70E-04 | ||
| TIGRFAM | 100 | 128 | 29 | 1.20E-04 | ||
| Pfam | 100 | 128 | 29 | 1.00E-05 | ||
| ProSiteProfiles | 102 | 128 | 27 | 6.051 | ||
| ProSiteProfiles | 129 | 163 | 35 | 10.38 | ||
| Pfam | 132 | 156 | 25 | 2.30E-04 | ||
| Pfam | 162 | 174 | 13 | 0.54 | ||
| ProSiteProfiles | 194 | 228 | 35 | 11.849 | ||
| TIGRFAM | 196 | 228 | 33 | 1.00E-07 | ||
| Pfam | 196 | 226 | 31 | 1.80E-08 | ||
| Gene3D | 197 | 292 | 96 | 7.00E-07 | ||
| Pfam | 230 | 251 | 22 | 1.30E-05 | ||
| ProSiteProfiles | 230 | 255 | 26 | 6.643 | ||
| TIGRFAM | 230 | 257 | 28 | 2.10E-06 | ||
| ProSiteProfiles | 256 | 290 | 35 | 13.68 | ||
| Pfam | 256 | 303 | 48 | 2.80E-11 | ||
| TIGRFAM | 259 | 291 | 33 | 1.00E-09 | ||
| ProSiteProfiles | 291 | 325 | 35 | 6.073 | ||
| Pfam | 356 | 405 | 50 | 1.50E-09 | ||
| ProSiteProfiles | 357 | 391 | 35 | 10.402 | ||
| Gene3D | 358 | 450 | 93 | 7.00E-07 | ||
| TIGRFAM | 359 | 392 | 34 | 1.60E-04 | ||
| ProSiteProfiles | 392 | 427 | 36 | 10.128 | ||
| TIGRFAM | 394 | 427 | 34 | 7.40E-06 | ||
| ProSiteProfiles | 428 | 454 | 27 | 6.084 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj0g3v0259639.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0259639.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.