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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0260369 |
| Transcript ID | Lj0g3v0260369.2 |
| Related isoforms 4 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Myb-like DNA-binding protein BAS1 [Medicago truncatula] gi|358347472|ref|XP_003637780.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 27 | 27 | – | – | |
| MobiDBLite | 90 | 112 | 23 | – | – | |
| MobiDBLite | 279 | 299 | 21 | – | – | |
| SMART | 321 | 413 | 93 | 0.02 | ||
| ProSiteProfiles | 322 | 409 | 88 | 5.25 | ||
| Gene3D | 324 | 340 | 17 | 9.40E-06 | ||
| Gene3D | 384 | 420 | 37 | 9.40E-06 | ||
| PANTHER | 387 | 516 | 130 | 2.00E-31 | – | |
| PANTHER | 387 | 516 | 130 | 2.00E-31 | – | |
| SUPERFAMILY | 393 | 447 | 55 | 8.41E-12 | ||
| ProSiteProfiles | 412 | 464 | 53 | 8.955 | ||
| SMART | 416 | 466 | 51 | 4.50E-05 | ||
| CDD | 419 | 464 | 46 | 8.11E-05 | – | |
| Gene3D | 421 | 475 | 55 | 6.50E-13 | ||
| ProSiteProfiles | 465 | 520 | 56 | 15.387 | ||
| SUPERFAMILY | 468 | 553 | 86 | 5.99E-20 | ||
| SMART | 469 | 518 | 50 | 7.90E-10 | ||
| CDD | 472 | 516 | 45 | 1.86E-11 | – | |
| Pfam | 473 | 532 | 60 | 1.30E-12 | – | |
| Gene3D | 476 | 525 | 50 | 1.40E-16 | ||
| ProSiteProfiles | 520 | 553 | 34 | 5.924 | ||
| SMART | 520 | 559 | 40 | 3.3 | ||
| CDD | 523 | 553 | 31 | 2.64E-04 | – | |
| Gene3D | 526 | 555 | 30 | 2.00E-08 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of Lj0g3v0260369.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0260369.2, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.