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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0262149 |
| Transcript ID | Lj0g3v0262149.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At4g35130, chloroplastic-like [Cicer arietinum] gi|502122937|ref|XP_004497944.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 2 | 31 | 30 | 9.50E-05 | ||
| Gene3D | 4 | 34 | 31 | 6.80E-08 | ||
| PANTHER | 7 | 265 | 259 | 1.00E-242 | – | |
| ProSiteProfiles | 7 | 41 | 35 | 9.175 | ||
| Pfam | 10 | 39 | 30 | 0.082 | ||
| ProSiteProfiles | 78 | 108 | 31 | 6.665 | ||
| ProSiteProfiles | 109 | 139 | 31 | 8.561 | ||
| Pfam | 109 | 155 | 47 | 4.80E-11 | ||
| TIGRFAM | 111 | 137 | 27 | 1.80E-04 | ||
| ProSiteProfiles | 143 | 177 | 35 | 5.952 | ||
| ProSiteProfiles | 178 | 212 | 35 | 7.53 | ||
| Pfam | 183 | 209 | 27 | 0.63 | ||
| Gene3D | 203 | 226 | 24 | 6.80E-08 | ||
| Pfam | 212 | 238 | 27 | 0.017 | ||
| ProSiteProfiles | 245 | 279 | 35 | 7.794 | ||
| Pfam | 248 | 274 | 27 | 0.61 | ||
| Gene3D | 282 | 364 | 83 | 6.80E-08 | ||
| Pfam | 284 | 306 | 23 | 0.61 | ||
| PANTHER | 309 | 593 | 285 | 1.00E-242 | – | |
| ProSiteProfiles | 310 | 344 | 35 | 8.912 | ||
| TIGRFAM | 313 | 343 | 31 | 3.90E-05 | ||
| Pfam | 313 | 340 | 28 | 5.60E-04 | ||
| ProSiteProfiles | 384 | 414 | 31 | 7.037 | ||
| Pfam | 414 | 462 | 49 | 2.90E-08 | ||
| ProSiteProfiles | 415 | 449 | 35 | 10.106 | ||
| TIGRFAM | 418 | 450 | 33 | 7.30E-06 | ||
| ProSiteProfiles | 450 | 485 | 36 | 8.068 | ||
| ProSiteProfiles | 486 | 516 | 31 | 5.93 | ||
| Pfam | 491 | 514 | 24 | 0.011 | ||
| SUPERFAMILY | 525 | 573 | 49 | 9.50E-05 | ||
| Gene3D | 538 | 591 | 54 | 6.80E-08 | ||
| ProSiteProfiles | 551 | 586 | 36 | 7.772 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj0g3v0262149.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0262149.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.