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Lj0g3v0262429.2

Overview

Field Value
Gene ID Lj0g3v0262429
Transcript ID Lj0g3v0262429.2
Related isoforms 2
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: homeobox-leucine zipper protein HDG2-like isoform X1 [Cicer arietinum] gi|502171637|ref|XP_004515074.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 69 69 – –
PANTHER
PTHR24326:SF200
40 136 97 6.80E-151 –
PANTHER
PTHR24326
40 136 97 6.80E-151 –
Gene3D
G3DSA:1.10.10.60
40 115 76 2.40E-22
IPR009057
SUPERFAMILY
SSF46689
47 117 71 1.34E-19
IPR009057
ProSiteProfiles
PS50071
57 117 61 16.989
IPR001356
SMART
SM00389
58 121 64 1.10E-19
IPR001356
Pfam
PF00046
60 115 56 2.70E-18
IPR001356
CDD
cd00086
60 118 59 1.62E-19 –
ProSitePatterns
PS00027
92 115 24 –
IPR017970
Coils
Coil
123 143 21 – –
PANTHER
PTHR24326:SF200
165 178 14 6.80E-151 –
PANTHER
PTHR24326
165 178 14 6.80E-151 –
SUPERFAMILY
SSF55961
241 472 232 6.32E-34 –
ProSiteProfiles
PS50848
241 473 233 43.765
IPR002913
CDD
cd08875
245 469 225 2.53E-128 –
SMART
SM00234
250 470 221 8.70E-60
IPR002913
Pfam
PF01852
252 470 219 2.30E-55
IPR002913
Gene3D
G3DSA:3.30.530.20
339 437 99 1.00E-06
IPR023393
PANTHER
PTHR24326:SF200
446 535 90 6.80E-151 –
PANTHER
PTHR24326
446 535 90 6.80E-151 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0008289
Molecular function Lipid binding Interacting selectively and non-covalently with a lipid.
Subterm of
GO:0043565
Molecular function Sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
Subterm of

Genome browser

LORE1 insertions 4

Expression data

Expression pattern

Expression pattern of Lj0g3v0262429.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0262429.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.