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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0273279 |
| Transcript ID | Lj0g3v0273279.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: DEAD-box ATP-dependent RNA helicase 8-like [Glycine max] gi|356520426|ref|XP_003528863.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 65 | 65 | – | – | |
| PANTHER | 5 | 44 | 40 | 0 | – | |
| PANTHER | 5 | 44 | 40 | 0 | – | |
| PANTHER | 66 | 478 | 413 | 0 | – | |
| PANTHER | 66 | 478 | 413 | 0 | – | |
| MobiDBLite | 81 | 108 | 28 | – | – | |
| Gene3D | 119 | 334 | 216 | 7.50E-74 | ||
| ProSiteProfiles | 130 | 158 | 29 | 10.097 | ||
| CDD | 132 | 332 | 201 | 2.25E-96 | – | |
| SMART | 149 | 345 | 197 | 1.40E-57 | ||
| Pfam | 155 | 319 | 165 | 5.80E-45 | ||
| ProSiteProfiles | 161 | 331 | 171 | 29.214 | ||
| SUPERFAMILY | 200 | 476 | 277 | 2.59E-69 | ||
| ProSitePatterns | 277 | 285 | 9 | – | ||
| Gene3D | 337 | 476 | 140 | 1.70E-45 | ||
| ProSiteProfiles | 341 | 478 | 138 | 22.021 | ||
| CDD | 342 | 470 | 129 | 2.37E-39 | – | |
| Pfam | 356 | 462 | 107 | 7.00E-28 | ||
| SMART | 381 | 462 | 82 | 1.20E-30 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of Lj0g3v0273279.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0273279.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.