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Lj0g3v0274999.1

Overview

Field Value
Gene ID Lj0g3v0274999
Transcript ID Lj0g3v0274999.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: ribokinase-like isoform 1 [Glycine max] gi|356556858|ref|XP_003546737.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 20 20 – –
PANTHER
PTHR10584:SF166
43 367 325 6.60E-133 –
PANTHER
PTHR10584
43 367 325 6.60E-133 –
Gene3D
G3DSA:3.40.1190.20
62 367 306 2.90E-87
IPR029056
Hamap
MF_01987
62 365 304 23.601
IPR011877
CDD
cd01174
63 358 296 1.63E-112
IPR011877
SUPERFAMILY
SSF53613
63 366 304 1.03E-78
IPR029056
Pfam
PF00294
64 358 295 3.10E-63
IPR011611
PRINTS
PR00990
66 87 22 2.80E-24
IPR002139
PRINTS
PR00990
93 112 20 2.80E-24
IPR002139
ProSitePatterns
PS00583
98 122 25 –
IPR002173
PRINTS
PR00990
165 178 14 2.80E-24
IPR002139
PRINTS
PR00990
235 250 16 2.80E-24
IPR002139
PRINTS
PR00990
279 290 12 2.80E-24
IPR002139
ProSitePatterns
PS00584
310 323 14 –
IPR002173

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004747
Molecular function Ribokinase activity Catalysis of the reaction: ATP + D-ribose = ADP + D-ribose 5-phosphate.
Subterm of
GO:0006014
Biological process D-ribose metabolic process The chemical reactions and pathways involving D-ribose (ribo-pentose). As beta-D-ribofuranose, D-ribose forms the glycose group of all ribonucleosides, ribonucleotides and ribonucleic acids, and also of ribose phosphates, various glycosides, some coenzymes and some forms of vitamin B12.
Subterm of
GO:0016301
Molecular function Kinase activity Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
Subterm of
GO:0016773
Molecular function Phosphotransferase activity, alcohol group as acceptor Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to an alcohol group (acceptor).
Subterm of

Genome browser

LORE1 insertions 16

Expression data

Expression pattern

Expression pattern of Lj0g3v0274999.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0274999.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.