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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0275259 |
| Transcript ID | Lj0g3v0275259.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: transcription factor IIIB 90 kDa subunit-like [Cicer arietinum] gi|502091837|ref|XP_004489648.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 461 | 461 | 1.40E-168 | ||
| PANTHER | 1 | 461 | 461 | 1.40E-168 | ||
| PRINTS | 16 | 36 | 21 | 2.10E-07 | ||
| Gene3D | 65 | 163 | 99 | 4.60E-18 | ||
| SUPERFAMILY | 74 | 163 | 90 | 3.63E-16 | ||
| CDD | 74 | 143 | 70 | 2.50E-05 | – | |
| SMART | 76 | 158 | 83 | 0.29 | ||
| Pfam | 78 | 142 | 65 | 3.60E-09 | ||
| PRINTS | 119 | 138 | 20 | 2.10E-07 | ||
| SUPERFAMILY | 172 | 269 | 98 | 5.44E-18 | ||
| SMART | 176 | 279 | 104 | 0.71 | ||
| CDD | 190 | 248 | 59 | 2.93E-04 | – | |
| Gene3D | 190 | 263 | 74 | 8.00E-20 | ||
| Pfam | 192 | 250 | 59 | 7.00E-10 | ||
| PRINTS | 213 | 229 | 17 | 2.10E-07 | ||
| Coils | 260 | 280 | 21 | – | – | |
| MobiDBLite | 342 | 418 | 77 | – | – | |
| Gene3D | 398 | 455 | 58 | 3.30E-09 | – | |
| Pfam | 417 | 542 | 126 | 5.10E-29 | ||
| MobiDBLite | 490 | 522 | 33 | – | – | |
| PANTHER | 491 | 542 | 52 | 1.40E-168 | ||
| PANTHER | 491 | 542 | 52 | 1.40E-168 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Transcription factor TFIIIB complex | A transcription factor complex that is involved in regulating transcription from RNA polymerase III (Pol III) promoters. TFIIIB contains the TATA-binding protein (TBP) and two Pol III-specific proteins, B'' and BRF. | ||
| Molecular function | RNA polymerase III general transcription initiation factor activity | An activity that contributes to transcription start site selection and transcription initiation of genes transcribed by RNA polymerase III. Factors required for RNA polymerase III transcription initiation include TFIIIA, TFIIIB and TFIIIC. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Biological process | Transcription by RNA polymerase III | The synthesis of RNA from a DNA template by RNA polymerase III, originating at an RNAP III promoter. | ||
| Molecular function | TBP-class protein binding | Interacting selectively and non-covalently with a member of the class of TATA-binding proteins (TBP), including any of the TBP-related factors (TRFs). | ||
| Biological process | Transcription preinitiation complex assembly | The aggregation, arrangement and bonding together of proteins on promoter DNA to form the transcriptional preinitiation complex (PIC), required for transcription. |
Expression pattern of Lj0g3v0275259.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0275259.1, powered by CORGI.
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