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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0283799 |
| Transcript ID | Lj0g3v0283799.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: LOW QUALITY PROTEIN: midasin-like [Cicer arietinum] gi|502156332|ref|XP_004510421.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 1293 | 1293 | 0 | ||
| PANTHER | 1 | 1293 | 1293 | 0 | – | |
| SUPERFAMILY | 321 | 570 | 250 | 8.67E-27 | ||
| Gene3D | 328 | 495 | 168 | 1.60E-32 | ||
| SMART | 339 | 464 | 126 | 0.29 | ||
| Pfam | 342 | 460 | 119 | 5.70E-17 | ||
| CDD | 342 | 446 | 105 | 1.19E-06 | – | |
| SUPERFAMILY | 639 | 701 | 63 | 6.12E-30 | ||
| Gene3D | 642 | 699 | 58 | 6.90E-43 | ||
| SMART | 650 | 896 | 247 | 1.20E-05 | ||
| Pfam | 653 | 714 | 62 | 5.90E-08 | ||
| CDD | 653 | 704 | 52 | 0.00197229 | – | |
| ProSitePatterns | 654 | 667 | 14 | – | ||
| Gene3D | 795 | 900 | 106 | 6.90E-43 | ||
| Pfam | 800 | 887 | 88 | 2.70E-07 | ||
| SUPERFAMILY | 801 | 968 | 168 | 6.12E-30 | ||
| SUPERFAMILY | 1033 | 1284 | 252 | 5.20E-41 | ||
| Gene3D | 1040 | 1209 | 170 | 9.20E-56 | ||
| CDD | 1040 | 1195 | 156 | 2.53E-06 | – | |
| SMART | 1053 | 1198 | 146 | 0.35 | ||
| Pfam | 1056 | 1192 | 137 | 4.50E-22 | ||
| PANTHER | 1311 | 1430 | 120 | 0 | – | |
| PANTHER | 1311 | 1430 | 120 | 0 | ||
| Gene3D | 1344 | 1414 | 71 | 5.60E-46 | ||
| SUPERFAMILY | 1345 | 1412 | 68 | 9.35E-35 | ||
| SMART | 1361 | 1597 | 237 | 2.20E-08 | ||
| CDD | 1364 | 1414 | 51 | 0.00811926 | – | |
| Pfam | 1364 | 1411 | 48 | 7.50E-07 | ||
| SUPERFAMILY | 1365 | 1501 | 137 | 5.43E-05 | ||
| PANTHER | 1449 | 2668 | 1220 | 0 | ||
| PANTHER | 1449 | 2668 | 1220 | 0 | – | |
| Pfam | 1488 | 1587 | 100 | 1.10E-15 | ||
| Gene3D | 1499 | 1592 | 94 | 5.60E-46 | ||
| SUPERFAMILY | 1500 | 1652 | 153 | 9.35E-35 | ||
| CDD | 1775 | 1928 | 154 | 4.22E-08 | – | |
| SUPERFAMILY | 1779 | 2027 | 249 | 6.14E-38 | ||
| Gene3D | 1779 | 1945 | 167 | 8.50E-45 | ||
| SMART | 1786 | 1973 | 188 | 0.029 | ||
| Pfam | 1789 | 1928 | 140 | 1.20E-15 | ||
| SUPERFAMILY | 2083 | 2147 | 65 | 6.11E-20 | ||
| Gene3D | 2085 | 2145 | 61 | 9.10E-31 | ||
| SMART | 2096 | 2342 | 247 | 1.9 | ||
| SUPERFAMILY | 2096 | 2258 | 163 | 8.33E-05 | ||
| Gene3D | 2263 | 2359 | 97 | 9.10E-31 | ||
| SUPERFAMILY | 2269 | 2362 | 94 | 6.11E-20 | ||
| PANTHER | 2756 | 2838 | 83 | 0 | – | |
| PANTHER | 2756 | 2838 | 83 | 0 | ||
| Coils | 2870 | 2871 | 2 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Ribosomal large subunit assembly | The aggregation, arrangement and bonding together of constituent RNAs and proteins to form the large ribosomal subunit. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Molecular function | ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. |
Expression pattern of Lj0g3v0283799.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0283799.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.