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Lj0g3v0287969.1

Overview

Field Value
Gene ID Lj0g3v0287969
Transcript ID Lj0g3v0287969.1
Lotus japonicus genome version MG20 v3.0
Description Peptide transporter PTR1 [Medicago truncatula] gi|357468661|ref|XP_003604615.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius 1 104 104
PANTHER 12 558 547 0
PANTHER 12 558 547 0
SUPERFAMILY 26 248 223 3.40E-29
CDD 48 238 191 1.14E-09
Gene3D 51 239 189 1.30E-15
ProSitePatterns 94 118 25
TMHMM 105 127 23
Phobius 105 128 24
Pfam 105 533 429 1.70E-125
Phobius 129 192 64
TMHMM 147 169 23
TMHMM 190 212 23
ProSitePatterns 191 203 13
Phobius 193 212 20
Phobius 213 217 5
TMHMM 216 238 23
Phobius 218 238 21
Phobius 239 335 97
SUPERFAMILY 323 557 235 3.40E-29
TMHMM 336 358 23
Phobius 336 357 22
Phobius 358 376 19
Phobius 377 397 21
Phobius 398 417 20
Phobius 418 441 24
TMHMM 421 443 23
Phobius 442 460 19
Phobius 461 480 20
Phobius 481 499 19
Phobius 500 521 22
TMHMM 511 533 23
Phobius 522 540 19
Phobius 541 557 17
Phobius 558 558 1

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Biological process Oligopeptide transport The directed movement of oligopeptides into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages.
Cellular component Membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
Molecular function Transmembrane transporter activity Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other.
Biological process Transmembrane transport The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other.

Expression data

Expression pattern

Expression pattern of Lj0g3v0287969.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0287969.1, powered by CORGI.

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