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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0287969 |
| Transcript ID | Lj0g3v0287969.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Peptide transporter PTR1 [Medicago truncatula] gi|357468661|ref|XP_003604615.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 104 | 104 | – | – | |
| PANTHER | 12 | 558 | 547 | 0 | – | |
| PANTHER | 12 | 558 | 547 | 0 | ||
| SUPERFAMILY | 26 | 248 | 223 | 3.40E-29 | ||
| CDD | 48 | 238 | 191 | 1.14E-09 | ||
| Gene3D | 51 | 239 | 189 | 1.30E-15 | – | |
| ProSitePatterns | 94 | 118 | 25 | – | ||
| TMHMM | 105 | 127 | 23 | – | – | |
| Phobius | 105 | 128 | 24 | – | – | |
| Pfam | 105 | 533 | 429 | 1.70E-125 | ||
| Phobius | 129 | 192 | 64 | – | – | |
| TMHMM | 147 | 169 | 23 | – | – | |
| TMHMM | 190 | 212 | 23 | – | – | |
| ProSitePatterns | 191 | 203 | 13 | – | ||
| Phobius | 193 | 212 | 20 | – | – | |
| Phobius | 213 | 217 | 5 | – | – | |
| TMHMM | 216 | 238 | 23 | – | – | |
| Phobius | 218 | 238 | 21 | – | – | |
| Phobius | 239 | 335 | 97 | – | – | |
| SUPERFAMILY | 323 | 557 | 235 | 3.40E-29 | ||
| TMHMM | 336 | 358 | 23 | – | – | |
| Phobius | 336 | 357 | 22 | – | – | |
| Phobius | 358 | 376 | 19 | – | – | |
| Phobius | 377 | 397 | 21 | – | – | |
| Phobius | 398 | 417 | 20 | – | – | |
| Phobius | 418 | 441 | 24 | – | – | |
| TMHMM | 421 | 443 | 23 | – | – | |
| Phobius | 442 | 460 | 19 | – | – | |
| Phobius | 461 | 480 | 20 | – | – | |
| Phobius | 481 | 499 | 19 | – | – | |
| Phobius | 500 | 521 | 22 | – | – | |
| TMHMM | 511 | 533 | 23 | – | – | |
| Phobius | 522 | 540 | 19 | – | – | |
| Phobius | 541 | 557 | 17 | – | – | |
| Phobius | 558 | 558 | 1 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Oligopeptide transport | The directed movement of oligopeptides into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj0g3v0287969.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0287969.1, powered by CORGI.
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