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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0287979 |
| Transcript ID | Lj0g3v0287979.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Peptide transporter PTR1 [Medicago truncatula] gi|357468661|ref|XP_003604615.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 104 | 104 | – | – | |
| PANTHER | 11 | 329 | 319 | 5.30E-216 | – | |
| PANTHER | 11 | 329 | 319 | 5.30E-216 | ||
| SUPERFAMILY | 25 | 241 | 217 | 3.66E-21 | ||
| CDD | 48 | 238 | 191 | 8.84E-13 | ||
| Gene3D | 50 | 238 | 189 | 1.00E-13 | – | |
| ProSitePatterns | 94 | 118 | 25 | – | ||
| TMHMM | 105 | 127 | 23 | – | – | |
| Pfam | 105 | 315 | 211 | 9.80E-67 | ||
| Phobius | 105 | 128 | 24 | – | – | |
| Phobius | 129 | 192 | 64 | – | – | |
| TMHMM | 147 | 169 | 23 | – | – | |
| TMHMM | 190 | 212 | 23 | – | – | |
| ProSitePatterns | 191 | 203 | 13 | – | ||
| Phobius | 193 | 212 | 20 | – | – | |
| Phobius | 213 | 217 | 5 | – | – | |
| TMHMM | 216 | 238 | 23 | – | – | |
| Phobius | 218 | 238 | 21 | – | – | |
| Phobius | 239 | 329 | 91 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Oligopeptide transport | The directed movement of oligopeptides into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj0g3v0287979.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0287979.4, powered by CORGI.
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