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Lj0g3v0292189.1

Overview

Field Value
Gene ID Lj0g3v0292189
Transcript ID Lj0g3v0292189.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic-like [Cicer arietinum] gi|502132311|ref|XP_004501298.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D 75 262 188 4.40E-37
SUPERFAMILY 75 267 193 1.36E-45
Hamap 77 707 631 35.423
Pfam 78 362 285 5.60E-85
TIGRFAM 80 704 625 1.80E-177
PANTHER 91 296 206 0
PANTHER 91 296 206 0
Coils 92 112 21
CDD 119 367 249 3.46E-87
Gene3D 317 384 68 4.40E-37
PANTHER 319 718 400 0
PANTHER 319 718 400 0
SUPERFAMILY 321 458 138 1.36E-45
Gene3D 385 559 175 1.70E-56
SUPERFAMILY 396 585 190 9.32E-53
SMART 397 562 166 9.70E-49
Pfam 398 558 161 7.40E-32
CDD 403 556 154 6.42E-61
SUPERFAMILY 570 706 137 6.02E-34
Gene3D 574 706 133 1.30E-33
Pfam 575 698 124 7.50E-31

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Molecular function 1-deoxy-D-xylulose-5-phosphate synthase activity Catalysis of the reaction: D-glyceraldehyde 3-phosphate + H(+) + pyruvate = 1-deoxy-D-xylulose 5-phosphate + CO(2).
Biological process Terpenoid biosynthetic process The chemical reactions and pathways resulting in the formation of terpenoids, any member of a class of compounds characterized by an isoprenoid chemical structure.

Expression data

Expression pattern

Expression pattern of Lj0g3v0292189.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0292189.1, powered by CORGI.

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