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Lj0g3v0292939.1

Overview

Field Value
Gene ID Lj0g3v0292939
Transcript ID Lj0g3v0292939.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: squalene monooxygenase-like [Glycine max] gi|356521261|ref|XP_003529275.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
CYTOPLASMIC_DOMAIN
1 290 290 – –
PANTHER
PTHR10835
1 350 350 3.80E-253 –
Gene3D
G3DSA:3.50.50.60
2 70 69 5.10E-11
IPR023753
SUPERFAMILY
SSF51905
11 65 55 1.30E-23
IPR023753
Pfam
PF08491
44 317 274 6.10E-119
IPR013698
SUPERFAMILY
SSF51905
159 269 111 1.30E-23
IPR023753
Gene3D
G3DSA:3.50.50.60
168 205 38 5.10E-11
IPR023753
TMHMM
TMhelix
288 310 23 – –
Phobius
TRANSMEMBRANE
291 310 20 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
311 315 5 – –
Phobius
TRANSMEMBRANE
316 334 19 – –
TMHMM
TMhelix
317 334 18 – –
Phobius
CYTOPLASMIC_DOMAIN
335 350 16 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004506
Molecular function Squalene monooxygenase activity Catalysis of the reaction: H(+) + NADPH + O(2) + squalene = (S)-2,3-epoxysqualene + H(2)O + NADP(+).
Subterm of
GO:0016021
Cellular component Integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
Subterm of
GO:0016491
Molecular function Oxidoreductase activity Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
Subterm of
GO:0050660
Molecular function Flavin adenine dinucleotide binding Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
Subterm of
GO:0055114
Biological process Oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
Subterm of

Genome browser

LORE1 insertions 4

Expression data

Expression pattern

Expression pattern of Lj0g3v0292939.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0292939.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.