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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0301139 |
| Transcript ID | Lj0g3v0301139.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At4g08210-like [Glycine max] gi|356518523|ref|XP_003527928.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 26 | 200 | 175 | 0 | – | |
| PANTHER | 26 | 200 | 175 | 0 | – | |
| ProSiteProfiles | 37 | 67 | 31 | 8.002 | ||
| SUPERFAMILY | 39 | 102 | 64 | 3.08E-06 | ||
| TIGRFAM | 42 | 70 | 29 | 2.00E-04 | ||
| ProSiteProfiles | 68 | 102 | 35 | 10.052 | ||
| Gene3D | 68 | 103 | 36 | 2.30E-10 | ||
| Pfam | 68 | 115 | 48 | 7.40E-08 | ||
| TIGRFAM | 70 | 100 | 31 | 9.60E-06 | ||
| ProSiteProfiles | 104 | 138 | 35 | 6.27 | ||
| ProSiteProfiles | 139 | 169 | 31 | 8.78 | ||
| Pfam | 142 | 170 | 29 | 0.0094 | ||
| Gene3D | 169 | 197 | 29 | 2.30E-10 | ||
| ProSiteProfiles | 170 | 204 | 35 | 10.633 | ||
| SUPERFAMILY | 171 | 197 | 27 | 3.08E-06 | ||
| Pfam | 173 | 199 | 27 | 4.40E-06 | ||
| TIGRFAM | 173 | 199 | 27 | 2.50E-05 | ||
| PANTHER | 231 | 335 | 105 | 0 | – | |
| PANTHER | 231 | 335 | 105 | 0 | – | |
| ProSiteProfiles | 235 | 269 | 35 | 6.697 | ||
| ProSiteProfiles | 270 | 304 | 35 | 6.785 | ||
| Pfam | 275 | 296 | 22 | 0.086 | ||
| Gene3D | 298 | 340 | 43 | 2.30E-10 | ||
| ProSiteProfiles | 306 | 340 | 35 | 8.758 | ||
| Pfam | 310 | 338 | 29 | 9.10E-04 | ||
| ProSiteProfiles | 341 | 375 | 35 | 5.064 | ||
| PANTHER | 371 | 685 | 315 | 0 | – | |
| PANTHER | 371 | 685 | 315 | 0 | – | |
| ProSiteProfiles | 376 | 406 | 31 | 6.928 | ||
| Pfam | 381 | 407 | 27 | 0.28 | ||
| ProSiteProfiles | 407 | 441 | 35 | 9.679 | ||
| Pfam | 409 | 438 | 30 | 9.60E-04 | ||
| ProSiteProfiles | 477 | 507 | 31 | 6.643 | ||
| Gene3D | 480 | 552 | 73 | 2.30E-10 | ||
| Pfam | 482 | 502 | 21 | 0.023 | ||
| ProSiteProfiles | 508 | 542 | 35 | 10.797 | ||
| TIGRFAM | 511 | 544 | 34 | 3.30E-06 | ||
| Pfam | 511 | 539 | 29 | 6.10E-05 | ||
| SUPERFAMILY | 516 | 540 | 25 | 3.08E-06 | ||
| ProSiteProfiles | 543 | 578 | 36 | 6.686 | ||
| SUPERFAMILY | 578 | 664 | 87 | 3.08E-06 | ||
| ProSiteProfiles | 579 | 609 | 31 | 7.585 | ||
| Pfam | 582 | 606 | 25 | 0.01 | ||
| Gene3D | 643 | 663 | 21 | 2.30E-10 | ||
| ProSiteProfiles | 645 | 679 | 35 | 6.215 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj0g3v0301139.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0301139.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.