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Lj0g3v0301649.1

Overview

Field Value
Gene ID Lj0g3v0301649
Transcript ID Lj0g3v0301649.1
Lotus japonicus genome version MG20 v3.0
Description
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 51 51 – –
SUPERFAMILY
SSF50630
139 231 93 2.82E-10
IPR021109
Pfam
PF13975
140 228 89 2.10E-11 –
CDD
cd00303
144 228 85 9.32E-20 –
ProSitePatterns
PS00141
149 160 12 –
IPR001969
SUPERFAMILY
SSF56672
314 393 80 1.56E-16 –
PANTHER
PTHR10178:SF309
326 388 63 1.00E-13 –
PANTHER
PTHR10178
326 388 63 1.00E-13 –
Gene3D
G3DSA:3.10.10.10
341 393 53 2.50E-10 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004190
Molecular function Aspartic-type endopeptidase activity Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which a water molecule bound by the side chains of aspartic residues at the active center acts as a nucleophile.
Subterm of
GO:0006508
Biological process Proteolysis The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
Subterm of

Genome browser

LORE1 insertions 5

Expression data

Expression pattern

Expression pattern of Lj0g3v0301649.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0301649.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.