Domain Predictions — View

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PF13975

Source: Pfam

Description

gag-polyprotein putative aspartyl protease

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 8

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0060469.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Polyprotein [Glycine max] gi\|27764548\|gb\|AAO23078.1\|	Domains IPR021109 PF13975 SSF50630 cd00303 mobidb-lite	5
Lj0g3v0080779.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Polyprotein [Glycine max] gi\|27764548\|gb\|AAO23078.1\|	Domains IPR021109 PF13975 SSF50630 cd00303	4
Lj0g3v0290049.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Polyprotein [Glycine max] gi\|27764548\|gb\|AAO23078.1\|	Domains IPR001969 IPR021109 PF13975 PS00141 SSF50630 cd00303	6
Lj0g3v0301649.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–		Domains G3DSA:3.10.10.10 IPR001969 IPR021109 PF13975 PS00141 PTHR10178 PTHR10178:SF309 SSF50630 SSF56672 cd00303 mobidb-lite	11
Lj0g3v0357099.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Polyprotein [Glycine max] gi\|27764548\|gb\|AAO23078.1\|	Domains G3DSA:3.10.10.10 IPR001969 IPR021109 PF13975 PS00141 PTHR10178 PTHR10178:SF309 SSF50630 SSF56672 cd00303	10
Lj1g3v0811870.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Polyprotein [Glycine max] gi\|27764548\|gb\|AAO23078.1\|	Domains IPR001969 IPR005162 IPR021109 PF03732 PF13975 PS00141 PTHR34482 SSF50630 cd00303 mobidb-lite	10
LotjaGi1g1v0311100_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Retrotransposon protein, putative, Ty3-gypsy subclass; TAIR: ATMG00860.1 DNA/RNA polymerases superfamily protein (ChrM); Swiss-Prot: sp\|Q99315\|YG31B_YEAST Transposon Ty3-G Gag-Pol polyprotein; TrEMBL-Plants: tr\|A2Q2C7\|A2Q2C7_MEDTR RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase aspartic, active site; Polynucleotidyl transferase, Ribonuclease H fold; Found in the gene: LotjaGi1g1v0311100_LC	Domains Coil G3DSA:1.10.340.70 G3DSA:2.40.50.40 G3DSA:2.40.70.10 G3DSA:3.10.10.10 G3DSA:3.10.20.370 G3DSA:3.30.420.10 G3DSA:3.30.70.270 IPR000477 IPR001584 IPR001969 IPR005162 IPR012337 IPR016197 IPR021109 IPR023780 IPR036397 IPR041577 IPR041588 IPR043128 IPR043502 PF00078 PF00385 PF00665 PF03732 PF13975 PF17919 PF17921 PS00141 PS50878 PS50994 PTHR24559 PTHR24559:SF294 SSF50630 SSF53098 SSF54160 SSF56672 cd00303 cd01647 cd09274 cd18979 mobidb-lite	42
LotjaGi3g1v0128000_LC.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Transposon Ty3-G Gag-Pol polyprotein; TAIR: AT3G29750.1 Eukaryotic aspartyl protease family protein; Swiss-Prot: sp\|P05400\|POL_CERV Enzymatic polyprotein; TrEMBL-Plants: tr\|Q84ZV5\|Q84ZV5_SOYBN Polyprotein; Found in the gene: LotjaGi3g1v0128000_LC	Domains G3DSA:2.40.70.10 IPR021109 PF13975 PTHR34482 PTHR34482:SF6 SSF50630 cd00303 mobidb-lite	8

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	12.50