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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0303639 |
| Transcript ID | Lj0g3v0303639.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At4g16835, mitochondrial-like [Cicer arietinum] gi|502152498|ref|XP_004508953.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 440 | 440 | 9.00E-304 | – | |
| PANTHER | 1 | 440 | 440 | 9.00E-304 | – | |
| ProSiteProfiles | 5 | 40 | 36 | 10.117 | ||
| Pfam | 7 | 33 | 27 | 0.08 | ||
| Gene3D | 9 | 52 | 44 | 2.30E-06 | ||
| ProSiteProfiles | 68 | 102 | 35 | 10.841 | ||
| Pfam | 71 | 100 | 30 | 6.20E-07 | ||
| TIGRFAM | 71 | 101 | 31 | 1.40E-05 | ||
| Pfam | 101 | 123 | 23 | 0.0016 | ||
| Gene3D | 102 | 200 | 99 | 2.30E-06 | ||
| SUPERFAMILY | 114 | 188 | 75 | 3.42E-08 | ||
| ProSiteProfiles | 130 | 160 | 31 | 10.358 | ||
| TIGRFAM | 132 | 158 | 27 | 3.20E-06 | ||
| Pfam | 132 | 158 | 27 | 1.70E-07 | ||
| ProSiteProfiles | 161 | 195 | 35 | 13.088 | ||
| Pfam | 161 | 208 | 48 | 1.20E-10 | ||
| TIGRFAM | 163 | 197 | 35 | 9.20E-10 | ||
| ProSiteProfiles | 231 | 261 | 31 | 8.791 | ||
| TIGRFAM | 236 | 264 | 29 | 9.40E-04 | ||
| Gene3D | 236 | 287 | 52 | 2.30E-06 | ||
| SUPERFAMILY | 238 | 419 | 182 | 3.42E-08 | ||
| Pfam | 261 | 308 | 48 | 1.80E-13 | ||
| ProSiteProfiles | 262 | 296 | 35 | 13.746 | ||
| TIGRFAM | 264 | 298 | 35 | 1.70E-09 | ||
| ProSiteProfiles | 297 | 327 | 31 | 6.412 | ||
| ProSiteProfiles | 333 | 367 | 35 | 7.629 | ||
| Pfam | 337 | 360 | 24 | 0.048 | ||
| Gene3D | 363 | 421 | 59 | 1.90E-05 | ||
| ProSiteProfiles | 399 | 433 | 35 | 6.665 | ||
| Pfam | 435 | 559 | 125 | 1.20E-42 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj0g3v0303639.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0303639.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.