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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0310459 |
| Transcript ID | Lj0g3v0310459.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: signal recognition particle 54 kDa protein, chloroplastic-like [Cicer arietinum] gi|502111902|ref|XP_004494200.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 234 | 234 | 2.30E-161 | – | |
| Gene3D | 1 | 97 | 97 | 1.40E-31 | ||
| Pfam | 1 | 96 | 96 | 2.20E-29 | ||
| SMART | 1 | 96 | 96 | 2.60E-10 | ||
| PANTHER | 1 | 234 | 234 | 2.30E-161 | – | |
| SUPERFAMILY | 2 | 98 | 97 | 5.32E-17 | ||
| ProSitePatterns | 69 | 82 | 14 | – | ||
| SUPERFAMILY | 98 | 230 | 133 | 8.90E-36 | ||
| Pfam | 127 | 225 | 99 | 2.20E-24 | ||
| Gene3D | 127 | 229 | 103 | 1.10E-27 | ||
| MobiDBLite | 186 | 211 | 26 | – | – | |
| MobiDBLite | 238 | 287 | 50 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. | ||
| Biological process | SRP-dependent cotranslational protein targeting to membrane | The targeting of proteins to a membrane that occurs during translation and is dependent upon two key components, the signal-recognition particle (SRP) and the SRP receptor. SRP is a cytosolic particle that transiently binds to the endoplasmic reticulum (ER) signal sequence in a nascent protein, to the large ribosomal unit, and to the SRP receptor in the ER membrane. | ||
| Molecular function | 7S RNA binding | Interacting selectively and non-covalently with 7S RNA, the RNA component of the signal recognition particle (SRP). | ||
| Cellular component | Signal recognition particle | A complex of protein and RNA which facilitates translocation of proteins across membranes. |
Expression pattern of Lj0g3v0310459.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0310459.1, powered by CORGI.
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