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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0311489 |
| Transcript ID | Lj0g3v0311489.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At1g79540-like [Glycine max] gi|356507504|ref|XP_003522504.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 383 | 383 | 9.10E-177 | – | |
| Phobius | 1 | 21 | 21 | – | – | |
| PANTHER | 1 | 383 | 383 | 9.10E-177 | – | |
| Phobius | 1 | 9 | 9 | – | – | |
| Pfam | 6 | 34 | 29 | 2.70E-08 | ||
| ProSiteProfiles | 9 | 43 | 35 | 11.301 | ||
| Phobius | 10 | 17 | 8 | – | – | |
| TIGRFAM | 12 | 40 | 29 | 1.20E-06 | ||
| Phobius | 18 | 21 | 4 | – | – | |
| Phobius | 22 | 541 | 520 | – | – | |
| ProSiteProfiles | 44 | 78 | 35 | 10.633 | ||
| TIGRFAM | 48 | 80 | 33 | 5.90E-08 | ||
| Pfam | 48 | 76 | 29 | 2.60E-05 | ||
| Pfam | 78 | 127 | 50 | 3.90E-14 | ||
| ProSiteProfiles | 79 | 113 | 35 | 12.321 | ||
| TIGRFAM | 82 | 115 | 34 | 2.50E-08 | ||
| ProSiteProfiles | 114 | 144 | 31 | 8.638 | ||
| TIGRFAM | 117 | 140 | 24 | 0.0032 | ||
| Pfam | 149 | 197 | 49 | 2.50E-15 | ||
| ProSiteProfiles | 149 | 183 | 35 | 11.652 | ||
| TIGRFAM | 151 | 184 | 34 | 5.70E-07 | ||
| ProSiteProfiles | 184 | 218 | 35 | 10.808 | ||
| TIGRFAM | 186 | 212 | 27 | 1.50E-07 | ||
| ProSiteProfiles | 232 | 266 | 35 | 7.585 | ||
| Pfam | 266 | 314 | 49 | 1.60E-17 | ||
| ProSiteProfiles | 267 | 301 | 35 | 13.022 | ||
| TIGRFAM | 270 | 303 | 34 | 3.30E-10 | ||
| ProSiteProfiles | 302 | 336 | 35 | 10.249 | ||
| TIGRFAM | 304 | 337 | 34 | 1.60E-04 | ||
| ProSiteProfiles | 337 | 367 | 31 | 6.04 | ||
| ProSiteProfiles | 406 | 440 | 35 | 8.374 | ||
| Pfam | 410 | 435 | 26 | 0.028 | ||
| PANTHER | 416 | 482 | 67 | 9.10E-177 | – | |
| PANTHER | 416 | 482 | 67 | 9.10E-177 | – | |
| ProSiteProfiles | 441 | 475 | 35 | 7.278 | ||
| ProSiteProfiles | 476 | 511 | 36 | 5.919 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of Lj0g3v0311489.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0311489.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.